Clinical sequencing: is WGS the better WES?

J Meienberg, R Bruggmann, K Oexle, G Matyas - Human genetics, 2016 - Springer
Current clinical next-generation sequencing is done by using gene panels and exome
analysis, both of which involve selective capturing of target regions. However, capturing has …

Comparison of exome and genome sequencing technologies for the complete capture of protein‐coding regions

SH Lelieveld, M Spielmann, S Mundlos… - Human …, 2015 - Wiley Online Library
For next‐generation sequencing technologies, sufficient base‐pair coverage is the foremost
requirement for the reliable detection of genomic variants. We investigated whether whole …

Low-pass whole-genome sequencing in clinical cytogenetics: a validated approach

Z Dong, J Zhang, P Hu, H Chen, J Xu, Q Tian… - Genetics in …, 2016 - nature.com
Purpose: Chromosomal microarray analysis is the gold standard for copy-number variant
(CNV) detection in prenatal and postnatal diagnosis. We aimed to determine whether next …

LAGOS-NE: a multi-scaled geospatial and temporal database of lake ecological context and water quality for thousands of US lakes

PA Soranno, LC Bacon, M Beauchene, KE Bednar… - …, 2017 - academic.oup.com
Understanding the factors that affect water quality and the ecological services provided by
freshwater ecosystems is an urgent global environmental issue. Predicting how water quality …

On the core segmentation algorithms of copy number variation detection tools

Y Zhang, W Liu, J Duan - Briefings in Bioinformatics, 2024 - academic.oup.com
Shotgun sequencing is a high-throughput method used to detect copy number variants
(CNVs). Although there are numerous CNV detection tools based on shotgun sequencing …

Copy number analysis of whole-genome data using BIC-seq2 and its application to detection of cancer susceptibility variants

R Xi, S Lee, Y Xia, TM Kim, PJ Park - Nucleic acids research, 2016 - academic.oup.com
Whole-genome sequencing data allow detection of copy number variation (CNV) at high
resolution. However, estimation based on read coverage along the genome suffers from …

Approach to genetic diagnosis of inborn errors of immunity through next-generation sequencing

E Karimi, F Mahmoudian, SOL Reyes, UA Bargir… - Molecular …, 2021 - Elsevier
Patients with inborn errors of immunity (IEI) present with a heterogeneous clinical and
immunological phenotype, therefore a correct molecular diagnosis is crucial for the …

An integrated framework for discovery and genotyping of genomic variants from high-throughput sequencing experiments

J Duitama, JC Quintero, DF Cruz… - Nucleic acids …, 2014 - academic.oup.com
Recent advances in high-throughput sequencing (HTS) technologies and computing
capacity have produced unprecedented amounts of genomic data that have unraveled the …

CNVcaller: highly efficient and widely applicable software for detecting copy number variations in large populations

X Wang, Z Zheng, Y Cai, T Chen, C Li, W Fu… - …, 2017 - academic.oup.com
Background The increasing amount of sequencing data available for a wide variety of
species can be theoretically used for detecting copy number variations (CNVs) at the …

Copy‐number analysis by base‐level normalization: An intuitive visualization tool for evaluating copy number variations

H Kim, Y Shim, TG Lee, D Won, JR Choi… - Clinical …, 2023 - Wiley Online Library
Next‐generation sequencing (NGS) facilitates comprehensive molecular analyses that help
with diagnosing unsolved disorders. In addition to detecting single‐nucleotide variations …