Incongruence in the phylogenomics era
Genome-scale data and the development of novel statistical phylogenetic approaches have
greatly aided the reconstruction of a broad sketch of the tree of life and resolved many of its …
greatly aided the reconstruction of a broad sketch of the tree of life and resolved many of its …
A practical guide to design and assess a phylogenomic study
J Lozano-Fernandez - Genome Biology and Evolution, 2022 - academic.oup.com
Over the last decade, molecular systematics has undergone a change of paradigm as high-
throughput sequencing now makes it possible to reconstruct evolutionary relationships …
throughput sequencing now makes it possible to reconstruct evolutionary relationships …
OrthoVenn2: a web server for whole-genome comparison and annotation of orthologous clusters across multiple species
L Xu, Z Dong, L Fang, Y Luo, Z Wei, H Guo… - Nucleic acids …, 2019 - academic.oup.com
OrthoVenn is a powerful web platform for the comparison and analysis of whole-genome
orthologous clusters. Here we present an updated version, OrthoVenn2, which provides new …
orthologous clusters. Here we present an updated version, OrthoVenn2, which provides new …
[HTML][HTML] Tempo and mode of genome evolution in the budding yeast subphylum
Budding yeasts (subphylum Saccharomycotina) are found in every biome and are as
genetically diverse as plants or animals. To understand budding yeast evolution, we …
genetically diverse as plants or animals. To understand budding yeast evolution, we …
Ctenophore relationships and their placement as the sister group to all other animals
Ctenophora, comprising approximately 200 described species, is an important lineage for
understanding metazoan evolution and is of great ecological and economic importance …
understanding metazoan evolution and is of great ecological and economic importance …
Xenacoelomorpha is the sister group to Nephrozoa
The position of Xenacoelomorpha in the tree of life remains a major unresolved question in
the study of deep animal relationships. Xenacoelomorpha, comprising Acoela …
the study of deep animal relationships. Xenacoelomorpha, comprising Acoela …
[HTML][HTML] Spider phylogenomics: untangling the Spider Tree of Life
ABSTRACT Spiders (Order Araneae) are massively abundant generalist arthropod
predators that are found in nearly every ecosystem on the planet and have persisted for over …
predators that are found in nearly every ecosystem on the planet and have persisted for over …
[HTML][HTML] Phylogenomics provides a robust topology of the major cnidarian lineages and insights on the origins of key organismal traits
Abstract Background The phylogeny of Cnidaria has been a source of debate for decades,
during which nearly all-possible relationships among the major lineages have been …
during which nearly all-possible relationships among the major lineages have been …
Phylogenomics of Lophotrochozoa with consideration of systematic error
Phylogenomic studies have improved understanding of deep metazoan phylogeny and
show promise for resolving incongruences among analyses based on limited numbers of …
show promise for resolving incongruences among analyses based on limited numbers of …
[PDF][PDF] Comprehensive species sampling and sophisticated algorithmic approaches refute the monophyly of Arachnida
JA Ballesteros, CE Santibáñez-López… - Molecular Biology …, 2022 - academic.oup.com
Deciphering the evolutionary relationships of Chelicerata (arachnids, horseshoe crabs, and
allied taxa) has proven notoriously difficult, due to their ancient rapid radiation and the …
allied taxa) has proven notoriously difficult, due to their ancient rapid radiation and the …