Strategies for efficient numerical implementation of hybrid multi-scale agent-based models to describe biological systems
Biologically related processes operate across multiple spatiotemporal scales. For
computational modeling methodologies to mimic this biological complexity, individual scale …
computational modeling methodologies to mimic this biological complexity, individual scale …
Global sensitivity analysis of biological multiscale models
M Renardy, C Hult, S Evans, JJ Linderman… - Current opinion in …, 2019 - Elsevier
Mathematical models of biological systems need to both reflect and manage the inherent
complexities of biological phenomena. Through their versatility and ability to capture …
complexities of biological phenomena. Through their versatility and ability to capture …
Macrophage polarization drives granuloma outcome during Mycobacterium tuberculosis infection
Mycobacterium tuberculosis, the causative agent of tuberculosis (TB), induces formation of
granulomas, structures in which immune cells and bacteria colocalize. Macrophages are …
granulomas, structures in which immune cells and bacteria colocalize. Macrophages are …
[HTML][HTML] Lymph nodes are sites of prolonged bacterial persistence during Mycobacterium tuberculosis infection in macaques
SKC Ganchua, AM Cadena, P Maiello… - PLoS …, 2018 - journals.plos.org
Tuberculosis is commonly considered a chronic lung disease, however, extrapulmonary
infection can occur in any organ. Even though lymph nodes (LN) are among the most …
infection can occur in any organ. Even though lymph nodes (LN) are among the most …
[图书][B] Mathematical immunology of virus infections
Understanding the cellular and molecular mechanisms that control the ability of the immune
system to mount a protective response against pathogen-derived foreign antigens, but avoid …
system to mount a protective response against pathogen-derived foreign antigens, but avoid …
Iterative community-driven development of a SARS-CoV-2 tissue simulator
M Getz, Y Wang, G An, M Asthana, A Becker… - BioRxiv, 2020 - biorxiv.org
The 2019 novel coronavirus, SARS-CoV-2, is an emerging pathogen of critical significance
to international public health. Knowledge of the interplay between molecular-scale virus …
to international public health. Knowledge of the interplay between molecular-scale virus …
[HTML][HTML] Spatial Organization and Recruitment of Non-Specific T Cells May Limit T Cell-Macrophage Interactions Within Mycobacterium tuberculosis Granulomas
Tuberculosis (TB) is a worldwide health problem; successful interventions such as vaccines
and treatment require a 2better understanding of the immune response to infection with …
and treatment require a 2better understanding of the immune response to infection with …
Tuneable resolution as a systems biology approach for multi‐scale, multi‐compartment computational models
The use of multi‐scale mathematical and computational models to study complex biological
processes is becoming increasingly productive. Multi‐scale models span a range of spatial …
processes is becoming increasingly productive. Multi‐scale models span a range of spatial …
[HTML][HTML] A multi-compartment hybrid computational model predicts key roles for dendritic cells in tuberculosis infection
S Marino, DE Kirschner - Computation, 2016 - mdpi.com
Tuberculosis (TB) is a world-wide health problem with approximately 2 billion people
infected with Mycobacterium tuberculosis (Mtb, the causative bacterium of TB). The …
infected with Mycobacterium tuberculosis (Mtb, the causative bacterium of TB). The …
Agent‐based models of inflammation in translational systems biology: A decade later
Y Vodovotz, G An - Wiley Interdisciplinary Reviews: Systems …, 2019 - Wiley Online Library
Agent‐based modeling is a rule‐based, discrete‐event, and spatially explicit computational
modeling method that employs computational objects that instantiate the rules and …
modeling method that employs computational objects that instantiate the rules and …