Incongruence in the phylogenomics era

JL Steenwyk, Y Li, X Zhou, XX Shen… - Nature Reviews Genetics, 2023 - nature.com
Genome-scale data and the development of novel statistical phylogenetic approaches have
greatly aided the reconstruction of a broad sketch of the tree of life and resolved many of its …

Evolution of the human pathogenic lifestyle in fungi

A Rokas - Nature Microbiology, 2022 - nature.com
Fungal pathogens cause more than a billion human infections every year, resulting in more
than 1.6 million deaths annually. Understanding the natural history and evolutionary ecology …

Pushing the frontiers of biodiversity research: Unveiling the global diversity, distribution, and conservation of fungi

T Niskanen, R Lücking, A Dahlberg… - Annual review of …, 2023 - annualreviews.org
Fungi comprise approximately 20% of all eukaryotic species and are connected to virtually
all life forms on Earth. Yet, their diversity remains contentious, their distribution elusive, and …

Evolutionary biology of lichen symbioses

T Spribille, P Resl, DE Stanton… - New …, 2022 - Wiley Online Library
Lichens are the symbiotic outcomes of open, interspecies relationships, central to which are
a fungus and a phototroph, typically an alga and/or cyanobacterium. The evolutionary …

Species in lichen-forming fungi: balancing between conceptual and practical considerations, and between phenotype and phylogenomics

R Lücking, SD Leavitt, DL Hawksworth - Fungal Diversity, 2021 - Springer
Lichens are symbiotic associations resulting from interactions among fungi (primary and
secondary mycobionts), algae and/or cyanobacteria (primary and secondary photobionts) …

Diploid-dominant life cycles characterize the early evolution of Fungi

KR Amses, DR Simmons… - Proceedings of the …, 2022 - National Acad Sciences
Most of the described species in kingdom Fungi are contained in two phyla, the Ascomycota
and the Basidiomycota (subkingdom Dikarya). As a result, our understanding of the biology …

Trends in yeast diversity discovery

T Boekhout, AS Amend, F El Baidouri, T Gabaldón… - Fungal Diversity, 2022 - Springer
Yeasts, usually defined as unicellular fungi, occur in various fungal lineages. Hence, they
are not a taxonomic unit, but rather represent a fungal lifestyle shared by several unrelated …

[HTML][HTML] EukProt: a database of genome-scale predicted proteins across the diversity of eukaryotes

DJ Richter, C Berney, JFH Strassert… - Peer Community …, 2022 - peercommunityjournal.org
EukProt is a database of published and publicly available predicted protein sets selected to
represent the breadth of eukaryotic diversity, currently including 993 species from all major …

Taming the beast: a revised classification of Cortinariaceae based on genomic data

K Liimatainen, JT Kim, L Pokorny, PM Kirk, B Dentinger… - Fungal Diversity, 2022 - Springer
Family Cortinariaceae currently includes only one genus, Cortinarius, which is the largest
Agaricales genus, with thousands of species worldwide. The species are important …

Systematic arrangement within the family Clitocybaceae (Tricholomatineae, Agaricales): phylogenetic and phylogenomic evidence, morphological data and …

ZM He, ZH Chen, T Bau, GS Wang, ZL Yang - Fungal Diversity, 2023 - Springer
The Clitocybaceae is a recently established family. Currently, the infrafamilial divisions and
relationships within the family are vague due to limited sampling and genes employed for …