This article gives an overview of recent progress in protein-protein docking and it identifies
several directions for future research. Recent results from the CAPRI blind docking …

Predicting the structure of protein–protein complexes using docking approaches is a difficult
problem whose major challenges include identifying correct solutions, and properly dealing …

The current status of docking procedures for predicting protein–protein interactions starting
from their three‐dimensional (3D) structure is reassessed by evaluating blind predictions …

To determine the structures of protein–protein interactions, protein docking is a valuable tool
that complements experimental methods to characterize protein complexes. Although …

Protein–protein interactions play a key role in biological processes. Identifying the
interacting residues is a first step toward understanding these interactions at a structural …

Protein interfaces are believed to be evolutionarily more conserved than the rest of the
protein surface, but this has not been properly verified using a large protein structural set …

Modern structural biology still draws the vast majority of information from crystallography, a
technique where the objects being investigated are embedded in a crystal lattice. Given the …

Protein surfaces are under significant selection pressure to maintain interactions with their
partners throughout evolution. Capturing how selection pressure acts at the interfaces of …

The identification of near native protein–protein complexes among a set of decoys remains
highly challenging. A strategy for improving the success rate of near native detection is to …

Molecular Dynamics (MD) simulations have been performed on a set of rigid‐body docking
poses, carried out over 25 protein–protein complexes. The results show that fully flexible …