Recent advances in crustacean genomics and their potential application in aquaculture
J Yuan, Y Yu, X Zhang, S Li, J Xiang… - Reviews in …, 2023 - Wiley Online Library
Genomic resources are increasingly being used to improve the production efficiency and
profitability of aquaculture. Crustaceans are a large group of invertebrates that …
profitability of aquaculture. Crustaceans are a large group of invertebrates that …
[HTML][HTML] Evidence for and localization of proposed causative variants in cattle and pig genomes
M Johnsson, MK Jungnickel - Genetics Selection Evolution, 2021 - Springer
Background This paper reviews the localization of published potential causative variants in
contemporary pig and cattle reference genomes, and the evidence for their causality. In spite …
contemporary pig and cattle reference genomes, and the evidence for their causality. In spite …
[HTML][HTML] Enhancer-promoter interaction maps provide insights into skeletal muscle-related traits in pig genome
J Li, Y Xiang, L Zhang, X Qi, Z Zheng, P Zhou, Z Tang… - BMC biology, 2022 - Springer
Background Gene expression programs are intimately linked to the interplay of active cis
regulatory elements mediated by chromatin contacts and associated RNAs. Genome-wide …
regulatory elements mediated by chromatin contacts and associated RNAs. Genome-wide …
Mapping and analysis of a spatiotemporal H3K27ac and gene expression spectrum in pigs
Y Zhu, Z Zhou, T Huang, Z Zhang, W Li, Z Ling… - Science China Life …, 2022 - Springer
The limited knowledge of genomic noncoding and regulatory regions has restricted our
ability to decipher the genetic mechanisms underlying complex traits in pigs. In this study …
ability to decipher the genetic mechanisms underlying complex traits in pigs. In this study …
RGD v2. 0: a major update of the ruminant functional and evolutionary genomics database
W Fu, R Wang, HA Nanaei, J Wang, D Hu… - Nucleic Acids …, 2022 - academic.oup.com
Abstract Ruminant Genome Database (RGD; http://animal. nwsuaf. edu. cn/RGD) provides
visualization and analysis tools for ruminant comparative genomics and functional …
visualization and analysis tools for ruminant comparative genomics and functional …
[HTML][HTML] Integration of multi-omics data reveals cis-regulatory variants that are associated with phenotypic differentiation of eastern from western pigs
Background The genetic mechanisms that underlie phenotypic differentiation in breeding
animals have important implications in evolutionary biology and agriculture. However, the …
animals have important implications in evolutionary biology and agriculture. However, the …
[HTML][HTML] Integration of ATAC-seq and RNA-seq analysis identifies key genes affecting intramuscular fat content in pigs
Z Xu, J Wu, J Zhou, Y Zhang, M Qiao, H Sun, Z Li… - Frontiers in …, 2022 - frontiersin.org
Meat quality is one of the most important economic traits in pig breeding and production, and
intramuscular fat (IMF) content is the major factor in improving meat quality. The IMF …
intramuscular fat (IMF) content is the major factor in improving meat quality. The IMF …
A large sequenced mutant library–valuable reverse genetic resource that covers 98% of sorghum genes
Mutant populations are crucial for functional genomics and discovering novel traits for crop
breeding. Sorghum, a drought and heat‐tolerant C4 species, requires a vast, large‐scale …
breeding. Sorghum, a drought and heat‐tolerant C4 species, requires a vast, large‐scale …
[HTML][HTML] Comparative epigenomics reveals the impact of ruminant-specific regulatory elements on complex traits
S Chen, S Liu, S Shi, Y Jiang, M Cao, Y Tang, W Li… - BMC biology, 2022 - Springer
Background Insights into the genetic basis of complex traits and disease in both human and
livestock species have been achieved over the past decade through detection of genetic …
livestock species have been achieved over the past decade through detection of genetic …
[HTML][HTML] Chicken chromatin accessibility atlas accelerates epigenetic annotation of birds and gene fine-mapping associated with growth traits
XN Zhu, YZ Wang, C Li, HY Wu, R Zhang… - Zoological …, 2023 - ncbi.nlm.nih.gov
The development of epigenetic maps, such as the ENCODE project in humans, provides
resources for gene regulation studies and a reference for research of disease-related …
resources for gene regulation studies and a reference for research of disease-related …