Machine learning in resting-state fMRI analysis

M Khosla, K Jamison, GH Ngo, A Kuceyeski… - Magnetic resonance …, 2019 - Elsevier
Abstract Machine learning techniques have gained prominence for the analysis of resting-
state functional Magnetic Resonance Imaging (rs-fMRI) data. Here, we present an overview …

Principles and open questions in functional brain network reconstruction

O Korhonen, M Zanin, D Papo - Human Brain Mapping, 2021 - Wiley Online Library
Graph theory is now becoming a standard tool in system‐level neuroscience. However,
endowing observed brain anatomy and dynamics with a complex network representation …

Deriving reproducible biomarkers from multi-site resting-state data: An Autism-based example

A Abraham, MP Milham, A Di Martino, RC Craddock… - NeuroImage, 2017 - Elsevier
Abstract Resting-state functional Magnetic Resonance Imaging (R-fMRI) holds the promise
to reveal functional biomarkers of neuropsychiatric disorders. However, extracting such …

Benchmarking functional connectome-based predictive models for resting-state fMRI

K Dadi, M Rahim, A Abraham, D Chyzhyk, M Milham… - NeuroImage, 2019 - Elsevier
Functional connectomes reveal biomarkers of individual psychological or clinical traits.
However, there is great variability in the analytic pipelines typically used to derive them from …

Which fMRI clustering gives good brain parcellations?

B Thirion, G Varoquaux, E Dohmatob… - Frontiers in …, 2014 - frontiersin.org
Analysis and interpretation of neuroimaging data often require one to divide the brain into a
number of regions, or parcels, with homogeneous characteristics, be these regions defined …

Functional connectome–based predictive modeling in autism

C Horien, DL Floris, AS Greene, S Noble, M Rolison… - Biological …, 2022 - Elsevier
Autism is a heterogeneous neurodevelopmental condition, and functional magnetic
resonance imaging–based studies have helped advance our understanding of its effects on …

Evaluation of functional MRI-based human brain parcellation: a review

P Moghimi, AT Dang, Q Do, TI Netoff… - Journal of …, 2022 - journals.physiology.org
Brain parcellations play a crucial role in the analysis of brain imaging data sets, as they can
significantly affect the outcome of the analysis. In recent years, several novel approaches for …

How machine learning is shaping cognitive neuroimaging

G Varoquaux, B Thirion - GigaScience, 2014 - academic.oup.com
Functional brain images are rich and noisy data that can capture indirect signatures of
neural activity underlying cognition in a given experimental setting. Can data mining …

[HTML][HTML] Large-scale probabilistic functional modes from resting state fMRI

SJ Harrison, MW Woolrich, EC Robinson, MF Glasser… - NeuroImage, 2015 - Elsevier
It is well established that it is possible to observe spontaneous, highly structured, fluctuations
in human brain activity from functional magnetic resonance imaging (fMRI) when the subject …

Computing personalized brain functional networks from fMRI using self-supervised deep learning

H Li, D Srinivasan, C Zhuo, Z Cui, RE Gur, RC Gur… - Medical image …, 2023 - Elsevier
A novel self-supervised deep learning (DL) method is developed to compute personalized
brain functional networks (FNs) for characterizing brain functional neuroanatomy based on …