Moving targets: Mechanisms regulating siRNA production and DNA methylation during plant development
LM Martins, JA Law - Current Opinion in Plant Biology, 2023 - Elsevier
DNA methylation is a conserved modification that must be precisely regulated during
development to facilitate its roles in silencing transposable elements and regulating gene …
development to facilitate its roles in silencing transposable elements and regulating gene …
The genetic basis of epigenetic variation and its consequences for adaptation
Recent population genomic studies in plants have shed new light on natural epigenetic
variation by identifying key genetic determinants,“trans modifiers,” that influence epigenetic …
variation by identifying key genetic determinants,“trans modifiers,” that influence epigenetic …
Population epigenetics: DNA methylation in the plant omics era
J Liu, X Zhong - Plant Physiology, 2024 - academic.oup.com
DNA methylation plays an important role in many biological processes. The mechanisms
underlying the establishment and maintenance of DNA methylation are well understood …
underlying the establishment and maintenance of DNA methylation are well understood …
[HTML][HTML] Conditional GWAS of non-CG transposon methylation in Arabidopsis thaliana reveals major polymorphisms in five genes
E Sasaki, J Gunis, I Reichardt-Gomez… - PLoS …, 2022 - journals.plos.org
Genome-wide association studies (GWAS) have revealed that the striking natural variation
for DNA CHH-methylation (mCHH; H is A, T, or C) of transposons has oligogenic …
for DNA CHH-methylation (mCHH; H is A, T, or C) of transposons has oligogenic …
[HTML][HTML] Exploring cereal metagenomics: unravelling microbial communities for improved food security
K Masenya, MC Manganyi, TB Dikobe - Microorganisms, 2024 - mdpi.com
Food security is an urgent global challenge, with cereals playing a crucial role in meeting
the nutritional requirements of populations worldwide. In recent years, the field of …
the nutritional requirements of populations worldwide. In recent years, the field of …
[HTML][HTML] Canalization of genome-wide transcriptional activity in Arabidopsis thaliana accessions by MET1-dependent CG methylation
Background Despite its conserved role on gene expression and transposable element (TE)
silencing, genome-wide CG methylation differs substantially between wild Arabidopsis …
silencing, genome-wide CG methylation differs substantially between wild Arabidopsis …
[HTML][HTML] On the causes of gene-body methylation variation in Arabidopsis thaliana
R Pisupati, V Nizhynska, A Mollá Morales… - PLoS …, 2023 - journals.plos.org
Gene-body methylation (gbM) refers to sparse CG methylation of coding regions, which is
especially prominent in evolutionarily conserved house-keeping genes. It is found in both …
especially prominent in evolutionarily conserved house-keeping genes. It is found in both …
Epigenetic control is involved in molecular dialogue in plant–microbe symbiosis
SD Zimmermann, I Gaillard - New Phytologist, 2023 - cnrs.hal.science
Epigenetic control is involved in molecular dialogue in plantmicrobe symbiosis Epigenetic
processes affect gene expression without changes in DNA sequences. In eukaryotes, the …
processes affect gene expression without changes in DNA sequences. In eukaryotes, the …
Differentially methylated genomic regions of lettuce seeds relate to divergence across morphologically distinct horticultural types
I Simko - AoB Plants, 2023 - academic.oup.com
Heritable cytosine methylation plays a role in shaping plant phenotypes; however, no
information is available about DNA methylation in cultivated lettuce (Lactuca sativa), one of …
information is available about DNA methylation in cultivated lettuce (Lactuca sativa), one of …
Heat stress response and transposon control in plant shoot stem cells
VH Nguyen, O Mittelsten Scheid, R Gutzat - bioRxiv, 2023 - biorxiv.org
Post-embryonic plant development must be coordinated in response to and with
environmental feedback. Development of above-ground organs is orchestrated from stem …
environmental feedback. Development of above-ground organs is orchestrated from stem …