Moving targets: Mechanisms regulating siRNA production and DNA methylation during plant development

LM Martins, JA Law - Current Opinion in Plant Biology, 2023 - Elsevier
DNA methylation is a conserved modification that must be precisely regulated during
development to facilitate its roles in silencing transposable elements and regulating gene …

The genetic basis of epigenetic variation and its consequences for adaptation

P Baduel, E Sasaki - Current Opinion in Plant Biology, 2023 - Elsevier
Recent population genomic studies in plants have shed new light on natural epigenetic
variation by identifying key genetic determinants,“trans modifiers,” that influence epigenetic …

Population epigenetics: DNA methylation in the plant omics era

J Liu, X Zhong - Plant Physiology, 2024 - academic.oup.com
DNA methylation plays an important role in many biological processes. The mechanisms
underlying the establishment and maintenance of DNA methylation are well understood …

[HTML][HTML] Conditional GWAS of non-CG transposon methylation in Arabidopsis thaliana reveals major polymorphisms in five genes

E Sasaki, J Gunis, I Reichardt-Gomez… - PLoS …, 2022 - journals.plos.org
Genome-wide association studies (GWAS) have revealed that the striking natural variation
for DNA CHH-methylation (mCHH; H is A, T, or C) of transposons has oligogenic …

[HTML][HTML] Exploring cereal metagenomics: unravelling microbial communities for improved food security

K Masenya, MC Manganyi, TB Dikobe - Microorganisms, 2024 - mdpi.com
Food security is an urgent global challenge, with cereals playing a crucial role in meeting
the nutritional requirements of populations worldwide. In recent years, the field of …

[HTML][HTML] Canalization of genome-wide transcriptional activity in Arabidopsis thaliana accessions by MET1-dependent CG methylation

T Srikant, W Yuan, KW Berendzen… - Genome Biology, 2022 - Springer
Background Despite its conserved role on gene expression and transposable element (TE)
silencing, genome-wide CG methylation differs substantially between wild Arabidopsis …

[HTML][HTML] On the causes of gene-body methylation variation in Arabidopsis thaliana

R Pisupati, V Nizhynska, A Mollá Morales… - PLoS …, 2023 - journals.plos.org
Gene-body methylation (gbM) refers to sparse CG methylation of coding regions, which is
especially prominent in evolutionarily conserved house-keeping genes. It is found in both …

Epigenetic control is involved in molecular dialogue in plant–microbe symbiosis

SD Zimmermann, I Gaillard - New Phytologist, 2023 - cnrs.hal.science
Epigenetic control is involved in molecular dialogue in plantmicrobe symbiosis Epigenetic
processes affect gene expression without changes in DNA sequences. In eukaryotes, the …

Differentially methylated genomic regions of lettuce seeds relate to divergence across morphologically distinct horticultural types

I Simko - AoB Plants, 2023 - academic.oup.com
Heritable cytosine methylation plays a role in shaping plant phenotypes; however, no
information is available about DNA methylation in cultivated lettuce (Lactuca sativa), one of …

Heat stress response and transposon control in plant shoot stem cells

VH Nguyen, O Mittelsten Scheid, R Gutzat - bioRxiv, 2023 - biorxiv.org
Post-embryonic plant development must be coordinated in response to and with
environmental feedback. Development of above-ground organs is orchestrated from stem …