Small molecule metabolites: discovery of biomarkers and therapeutic targets

S Qiu, Y Cai, H Yao, C Lin, Y Xie, S Tang… - Signal Transduction and …, 2023 - nature.com
Metabolic abnormalities lead to the dysfunction of metabolic pathways and metabolite
accumulation or deficiency which is well-recognized hallmarks of diseases. Metabolite …

Mass spectrometry‐based high‐throughput proteomics and its role in biomedical studies and systems biology

CB Messner, V Demichev, Z Wang, J Hartl… - …, 2023 - Wiley Online Library
There are multiple reasons why the next generation of biological and medical studies
require increasing numbers of samples. Biological systems are dynamic, and the effect of a …

Oxonium ion scanning mass spectrometry for large-scale plasma glycoproteomics

MEH White, LR Sinn, DM Jones, J de Folter… - Nature Biomedical …, 2024 - nature.com
Protein glycosylation, a complex and heterogeneous post-translational modification that is
frequently dysregulated in disease, has been difficult to analyse at scale. Here we report a …

[HTML][HTML] Using the ELF test, FIB-4 and NAFLD fibrosis score to screen the population for liver disease

M Kjaergaard, KP Lindvig, KH Thorhauge… - Journal of …, 2023 - Elsevier
Background & Aims There is a need for accurate biomarkers of fibrosis for population
screening of alcohol-related and non-alcoholic fatty liver disease (ALD, NAFLD). We …

[HTML][HTML] Artificial intelligence in pharmaceutical sciences

M Lu, J Yin, Q Zhu, G Lin, M Mou, F Liu, Z Pan, N You… - Engineering, 2023 - Elsevier
Drug discovery and development affects various aspects of human health and dramatically
impacts the pharmaceutical market. However, investments in a new drug often go …

Interpreting biologically informed neural networks for enhanced proteomic biomarker discovery and pathway analysis

E Hartman, AM Scott, C Karlsson, T Mohanty… - Nature …, 2023 - nature.com
The incorporation of machine learning methods into proteomics workflows improves the
identification of disease-relevant biomarkers and biological pathways. However, machine …

A proteo-transcriptomic map of non-alcoholic fatty liver disease signatures

O Govaere, M Hasoon, L Alexander, S Cockell… - Nature …, 2023 - nature.com
Non-alcoholic fatty liver disease (NAFLD) is a common, progressive liver disease strongly
associated with the metabolic syndrome. It is unclear how progression of NAFLD towards …

Confined cascade metabolic reprogramming nanoreactor for targeted alcohol detoxification and alcoholic liver injury management

X Geng, X Du, W Wang, C Zhang, X Liu, Y Qu… - ACS …, 2023 - ACS Publications
Alcoholic liver injury (ALI) is the leading cause of serious liver disease, whereas current
treatments are mostly supportive and unable to metabolize alcohol directly. Here we report a …

Evolution of mass spectrometry instruments and techniques for blood proteomics

Y Zhao, Q Xue, M Wang, B Meng, Y Jiang… - Journal of Proteome …, 2023 - ACS Publications
Mass spectrometry (MS)-based blood proteomics is a crucial research focus in identifying
disease biomarkers. Blood serum or plasma is the most commonly used sample for such …

High-throughput proteomics uncovers exercise training and type 2 diabetes–induced changes in human white adipose tissue

JK Larsen, R Kruse, N Sahebekhtiari… - Science …, 2023 - science.org
White adipose tissue (WAT) is important for metabolic homeostasis. We established the
differential proteomic signatures of WAT in glucose-tolerant lean and obese individuals and …