The structure, function and evolution of proteins that bind DNA and RNA

WH Hudson, EA Ortlund - Nature reviews Molecular cell biology, 2014 - nature.com
Proteins that bind both DNA and RNA typify the ability of a single gene product to perform
multiple functions. Such DNA-and RNA-binding proteins (DRBPs) have unique functional …

Origins of specificity in protein-DNA recognition

R Rohs, X Jin, SM West, R Joshi… - Annual review of …, 2010 - annualreviews.org
Specific interactions between proteins and DNA are fundamental to many biological
processes. In this review, we provide a revised view of protein-DNA interactions that …

Web 3DNA 2.0 for the analysis, visualization, and modeling of 3D nucleic acid structures

S Li, WK Olson, XJ Lu - Nucleic acids research, 2019 - academic.oup.com
Abstract Web 3DNA (w3DNA) 2.0 is a significantly enhanced version of the widely used
w3DNA server for the analysis, visualization, and modeling of 3D nucleic-acid-containing …

The HADDOCK web server for data-driven biomolecular docking

SJ De Vries, M Van Dijk, AMJJ Bonvin - Nature protocols, 2010 - nature.com
Computational docking is the prediction or modeling of the three-dimensional structure of a
biomolecular complex, starting from the structures of the individual molecules in their free …

Structure of the yeast mitochondrial large ribosomal subunit

A Amunts, A Brown, X Bai, JL Llácer, T Hussain… - Science, 2014 - science.org
Mitochondria have specialized ribosomes that have diverged from their bacterial and
cytoplasmic counterparts. We have solved the structure of the yeast mitoribosomal large …

The structure of the human mitochondrial ribosome

A Amunts, A Brown, J Toots, SHW Scheres… - Science, 2015 - science.org
The highly divergent ribosomes of human mitochondria (mitoribosomes) synthesize 13
essential proteins of oxidative phosphorylation complexes. We have determined the …

[PDF][PDF] Structures of the HIN domain: DNA complexes reveal ligand binding and activation mechanisms of the AIM2 inflammasome and IFI16 receptor

T Jin, A Perry, J Jiang, P Smith, JA Curry… - Immunity, 2012 - cell.com
Recognition of DNA by the innate immune system is central to antiviral and antibacterial
defenses, as well as an important contributor to autoimmune diseases involving self DNA …

Structure of the large ribosomal subunit from human mitochondria

A Brown, A Amunts, X Bai, Y Sugimoto, PC Edwards… - Science, 2014 - science.org
Human mitochondrial ribosomes are highly divergent from all other known ribosomes and
are specialized to exclusively translate membrane proteins. They are linked with hereditary …

DSSR: an integrated software tool for dissecting the spatial structure of RNA

XJ Lu, HJ Bussemaker, WK Olson - Nucleic acids research, 2015 - academic.oup.com
Insight into the three-dimensional architecture of RNA is essential for understanding its
cellular functions. However, even the classic transfer RNA structure contains features that …

Functional nucleic acid nanomaterials: development, properties, and applications

W Xu, W He, Z Du, L Zhu, K Huang… - Angewandte Chemie …, 2021 - Wiley Online Library
Functional nucleic acid (FNA) nanotechnology is an interdisciplinary field between nucleic
acid biochemistry and nanotechnology that focuses on the study of interactions between …