Intragenic DNA methylation in transcriptional regulation, normal differentiation and cancer

M Kulis, AC Queirós, R Beekman… - Biochimica et Biophysica …, 2013 - Elsevier
Ever since the discovery of DNA methylation at cytosine residues, the role of this so called
fifth base has been extensively studied and debated. Until recently, the majority of DNA …

The mutational landscape of human somatic and germline cells

L Moore, A Cagan, THH Coorens, MDC Neville… - Nature, 2021 - nature.com
Over the course of an individual's lifetime, normal human cells accumulate mutations. Here
we compare the mutational landscape in 29 cell types from the soma and germline using …

DNA methylation signatures for breast cancer classification and prognosis

M Szyf - Genome medicine, 2012 - Springer
Abstract Changes in gene expression that reset a cell program from a normal to a diseased
state involve multiple genetic circuitries, creating a characteristic signature of gene …

Replication timing and epigenome remodelling are associated with the nature of chromosomal rearrangements in cancer

Q Du, SA Bert, NJ Armstrong, CE Caldon… - Nature …, 2019 - nature.com
DNA replication timing is known to facilitate the establishment of the epigenome, however,
the intimate connection between replication timing and changes to the genome and …

Quantifying propagation of DNA methylation and hydroxymethylation with iDEMS

KR Stewart-Morgan, CE Requena, V Flury, Q Du… - Nature Cell …, 2023 - nature.com
DNA methylation is a critical epigenetic mark in mammalian cells. Many aspects of DNA
methylation maintenance have been characterized; however, the exact kinetics of post …

The early‐life social environment and DNA methylation

M Szyf - Clinical genetics, 2012 - Wiley Online Library
Szyf M. The early‐life social environment and DNA methylation. DNA methylation is a
chemical modification of DNA that confers, upon identical sequences, different identities that …

Pancreatic cancer patient survival correlates with DNA methylation of pancreas development genes

MJ Thompson, L Rubbi, DW Dawson, TR Donahue… - PloS one, 2015 - journals.plos.org
DNA methylation is an epigenetic mark associated with regulation of transcription and
genome structure. These markers have been investigated in a variety of cancer settings for …

The protective role of dormant origins in response to replicative stress

L Courtot, JS Hoffmann, V Bergoglio - International journal of molecular …, 2018 - mdpi.com
Genome stability requires tight regulation of DNA replication to ensure that the entire
genome of the cell is duplicated once and only once per cell cycle. In mammalian cells …

Nanoscale changes in chromatin organization represent the initial steps of tumorigenesis: a transmission electron microscopy study

L Cherkezyan, Y Stypula-Cyrus, H Subramanian… - BMC cancer, 2014 - Springer
Background Nuclear alterations are a well-known manifestation of cancer. However, little is
known about the early, microscopically-undetectable stages of malignant transformation …

Kidney cancer is characterized by aberrant methylation of tissue-specific enhancers that are prognostic for overall survival

CY Hu, D Mohtat, Y Yu, YA Ko, N Shenoy… - Clinical Cancer …, 2014 - AACR
Purpose: Even though recent studies have shown that genetic changes at enhancers can
influence carcinogenesis, most methylomic studies have focused on changes at promoters …