[HTML][HTML] IMP: a pipeline for reproducible reference-independent integrated metagenomic and metatranscriptomic analyses
Existing workflows for the analysis of multi-omic microbiome datasets are lab-specific and
often result in sub-optimal data usage. Here we present IMP, a reproducible and modular …
often result in sub-optimal data usage. Here we present IMP, a reproducible and modular …
[HTML][HTML] Biogenic Silver Nanoparticles as a Post-surgical Treatment for Corynebacterium pseudotuberculosis Infection in Small Ruminants
LM Santos, D Stanisic, UJ Menezes… - Frontiers in …, 2019 - frontiersin.org
Caseous lymphadenitis (CL) is an infectious and zoonotic disease characterized by the
development of granulomas in the lymph nodes and internal organs of small ruminants. The …
development of granulomas in the lymph nodes and internal organs of small ruminants. The …
[HTML][HTML] Activity of Ethanolic and Supercritical Propolis Extracts in Corynebacterium pseudotuberculosis and Its Associated Biofilm
LM Santos, DM Rodrigues, MA Kalil… - Frontiers in Veterinary …, 2021 - frontiersin.org
Corynebacterium pseudotuberculosis is the etiological agent of caseous lymphadenitis in
small ruminants, a chronic disease characterized by the development of granulomas in …
small ruminants, a chronic disease characterized by the development of granulomas in …
[HTML][HTML] Genomic repeats, misassembly and reannotation: a case study with long-read resequencing of Porphyromonas gingivalis reference strains
L Acuña-Amador, A Primot, E Cadieu, A Roulet… - BMC genomics, 2018 - Springer
Background Without knowledge of their genomic sequences, it is impossible to make
functional models of the bacteria that make up human and animal microbiota. Unfortunately …
functional models of the bacteria that make up human and animal microbiota. Unfortunately …
Recombinant esterase from Corynebacterium pseudotuberculosis in DNA and subunit recombinant vaccines partially protects mice against challenge
AA Brum, AFS Rezende… - Journal of medical …, 2017 - microbiologyresearch.org
Purpose. We tested the efficacy of the esterase encoded by cp1002_RS09720 from
Corynebacterium pseudotuberculosis in recombinant subunit and DNA caseous …
Corynebacterium pseudotuberculosis in recombinant subunit and DNA caseous …
[HTML][HTML] Activity of biogenic silver nanoparticles in planktonic and biofilm-associated Corynebacterium pseudotuberculosis
LM Santos, DM Rodrigues, BVB Alves, MA Kalil… - PeerJ, 2024 - peerj.com
Corynebacterium pseudotuberculosis is a gram-positive bacterium and is the etiologic agent
of caseous lymphadenitis (CL) in small ruminants. This disease is characterized by the …
of caseous lymphadenitis (CL) in small ruminants. This disease is characterized by the …
[HTML][HTML] Re-sequencing and optical mapping reveals misassemblies and real inversions on Corynebacterium pseudotuberculosis genomes
The number of draft genomes deposited in Genbank from the National Center for
Biotechnology Information (NCBI) is higher than the complete ones. Draft genomes are …
Biotechnology Information (NCBI) is higher than the complete ones. Draft genomes are …
[HTML][HTML] Proteus: An algorithm for proposing stabilizing mutation pairs based on interactions observed in known protein 3D structures
Background Protein engineering has many applications for industry, such as the
development of new drugs, vaccines, treatment therapies, food, and biofuel production. A …
development of new drugs, vaccines, treatment therapies, food, and biofuel production. A …
riboSeed: leveraging prokaryotic genomic architecture to assemble across ribosomal regions
The vast majority of bacterial genome sequencing has been performed using Illumina short
reads. Because of the inherent difficulty of resolving repeated regions with short reads …
reads. Because of the inherent difficulty of resolving repeated regions with short reads …
[HTML][HTML] SIMBA: a web tool for managing bacterial genome assembly generated by Ion PGM sequencing technology
Abstract Background The evolution of Next-Generation Sequencing (NGS) has considerably
reduced the cost per sequenced-base, allowing a significant rise of sequencing projects …
reduced the cost per sequenced-base, allowing a significant rise of sequencing projects …