QDD version 3.1: A user‐friendly computer program for microsatellite selection and primer design revisited: Experimental validation of variables determining …

E Meglécz, N Pech, A Gilles, V Dubut… - Molecular ecology …, 2014 - Wiley Online Library
Microsatellite marker development has been greatly simplified by the use of high‐throughput
sequencing followed by in silico microsatellite detection and primer design. However, the …

De Novo Assembly and Transcriptome Analysis of the Rubber Tree (Hevea brasiliensis) and SNP Markers Development for Rubber Biosynthesis Pathways

CC Mantello, CB Cardoso-Silva, CC da Silva… - PloS one, 2014 - journals.plos.org
Hevea brasiliensis (Willd. Ex Adr. Juss.) Muell.-Arg. is the primary source of natural rubber
that is native to the Amazon rainforest. The singular properties of natural rubber make it …

SSR markers: a tool for species identification in Psidium (Myrtaceae)

AC Tuler, TT Carrijo, LR Nóia, A Ferreira… - Molecular Biology …, 2015 - Springer
Molecular DNA markers are used for detection of polymorphisms in individuals. As they are
independent of developmental stage of the plant and environmental influences, they can be …

De Novo Mining and Validating Novel Microsatellite Markers to Assess Genetic Diversity in Maruca vitrata (F.), a Legume Pod Borer

RM Mahalle, TC Bosamia, S Chakravarty, K Srivastava… - Genes, 2023 - mdpi.com
Maruca vitrata (Fabricius) is an invasive insect pest capable of causing enormous economic
losses to a broad spectrum of leguminous crops. Microsatellites are valuable molecular …

Enriched tandem repeats in chromosomal fusion points of Rineloricaria latirostris (Boulenger, 1900) (Siluriformes: Loricariidae)

L Glugoski, V Nogaroto, GA Deon, M Azambuja… - …, 2022 - cdnsciencepub.com
Cytogenetic data showed the enrichment of repetitive DNAs in chromosomal rearrangement
points between closely related species in armored catfishes. Still, few studies integrated …

De novo transcriptome analysis and microsatellite marker development for population genetic study of a serious insect pest, Rhopalosiphum padi (L.) (Hemiptera …

X Duan, K Wang, S Su, R Tian, Y Li, M Chen - PLoS One, 2017 - journals.plos.org
The bird cherry-oat aphid, Rhopalosiphum padi (L.), is one of the most abundant aphid pests
of cereals and has a global distribution. Next-generation sequencing (NGS) is a rapid and …

Next generation sequencing and FISH reveal uneven and nonrandom microsatellite distribution in two grasshopper genomes

FJ Ruiz-Ruano, Á Cuadrado, EE Montiel… - Chromosoma, 2015 - Springer
Simple sequence repeats (SSRs), also known as microsatellites, are one of the prominent
DNA sequences shaping the repeated fraction of eukaryotic genomes. In spite of their …

Genome-Wide Characterization and Linkage Mapping of Simple Sequence Repeats in Mei (Prunus mume Sieb. et Zucc.)

L Sun, W Yang, Q Zhang, T Cheng, H Pan, Z Xu… - PloS one, 2013 - journals.plos.org
Because of its popularity as an ornamental plant in East Asia, mei (Prunus mume Sieb. et
Zucc.) has received increasing attention in genetic and genomic research with the recent …

Rapid Development of Microsatellite Markers for the Endangered Fish Schizothorax biddulphi (Günther) Using Next Generation Sequencing and Cross-Species …

W Luo, Z Nie, F Zhan, J Wei, W Wang… - International journal of …, 2012 - mdpi.com
Tarim schizothoracin (Schizothorax biddulphi) is an endemic fish species native to the Tarim
River system of Xinjiang and has been classified as an extremely endangered freshwater …

Phylogeny of the order Phoenicopteriformes and population genetics of the Caribbean flamingo (Phoenicopterus ruber: Aves)

RC Frias-Soler, A Bauer, MA Grohme… - Zoological Journal of …, 2022 - academic.oup.com
Flamingos are highly mobile waterbirds that can be found in tropical and subtropical regions
worldwide. The large distribution range of flamingos, the inaccessibility of most of their …