Artificial intelligence in drug design
G Hessler, KH Baringhaus - Molecules, 2018 - mdpi.com
Artificial Intelligence (AI) plays a pivotal role in drug discovery. In particular artificial neural
networks such as deep neural networks or recurrent networks drive this area. Numerous …
networks such as deep neural networks or recurrent networks drive this area. Numerous …
From machine learning to deep learning: Advances in scoring functions for protein–ligand docking
Molecule docking has been regarded as a routine tool for drug discovery, but its accuracy
highly depends on the reliability of scoring functions (SFs). With the rapid development of …
highly depends on the reliability of scoring functions (SFs). With the rapid development of …
Structure-aware interactive graph neural networks for the prediction of protein-ligand binding affinity
Drug discovery often relies on the successful prediction of protein-ligand binding affinity.
Recent advances have shown great promise in applying graph neural networks (GNNs) for …
Recent advances have shown great promise in applying graph neural networks (GNNs) for …
Potential of quantum computing for drug discovery
Quantum computing has rapidly advanced in recent years due to substantial development in
both hardware and algorithms. These advances are carrying quantum computers closer to …
both hardware and algorithms. These advances are carrying quantum computers closer to …
Machine learning classification can reduce false positives in structure-based virtual screening
YO Adeshina, EJ Deeds… - Proceedings of the …, 2020 - National Acad Sciences
With the recent explosion in the size of libraries available for screening, virtual screening is
positioned to assume a more prominent role in early drug discovery's search for active …
positioned to assume a more prominent role in early drug discovery's search for active …
Insights into the molecular mechanisms of protein‐ligand interactions by molecular docking and molecular dynamics simulation: a case of oligopeptide binding protein
Y Fu, J Zhao, Z Chen - Computational and mathematical …, 2018 - Wiley Online Library
Protein‐ligand interactions are a necessary prerequisite for signal transduction,
immunoreaction, and gene regulation. Protein‐ligand interaction studies are important for …
immunoreaction, and gene regulation. Protein‐ligand interaction studies are important for …
Comparison study of computational prediction tools for drug-target binding affinities
The drug development is generally arduous, costly, and success rates are low. Thus, the
identification of drug-target interactions (DTIs) has become a crucial step in early stages of …
identification of drug-target interactions (DTIs) has become a crucial step in early stages of …
RNA–ligand molecular docking: Advances and challenges
With rapid advances in computer algorithms and hardware, fast and accurate virtual
screening has led to a drastic acceleration in selecting potent small molecules as drug …
screening has led to a drastic acceleration in selecting potent small molecules as drug …
DeepBindRG: a deep learning based method for estimating effective protein–ligand affinity
Proteins interact with small molecules to modulate several important cellular functions. Many
acute diseases were cured by small molecule binding in the active site of protein either by …
acute diseases were cured by small molecule binding in the active site of protein either by …
Using attribution to decode binding mechanism in neural network models for chemistry
Deep neural networks have achieved state-of-the-art accuracy at classifying molecules with
respect to whether they bind to specific protein targets. A key breakthrough would occur if …
respect to whether they bind to specific protein targets. A key breakthrough would occur if …