Deep learning in photoacoustic tomography: current approaches and future directions

A Hauptmann, B Cox - Journal of Biomedical Optics, 2020 - spiedigitallibrary.org
Biomedical photoacoustic tomography, which can provide high-resolution 3D soft tissue
images based on optical absorption, has advanced to the stage at which translation from the …

[HTML][HTML] Agent-based modeling of morphogenetic systems: Advantages and challenges

CM Glen, ML Kemp, EO Voit - PLoS computational biology, 2019 - journals.plos.org
The complexity of morphogenesis poses a fundamental challenge to understanding the
mechanisms governing the formation of biological patterns and structures. Over the past …

Mathematical models for chemotaxis and their applications in self-organisation phenomena

KJ Painter - Journal of theoretical biology, 2019 - Elsevier
Chemotaxis is a fundamental guidance mechanism of cells and organisms, responsible for
attracting microbes to food, embryonic cells into developing tissues, immune cells to …

[HTML][HTML] Mechanical cell-matrix feedback explains pairwise and collective endothelial cell behavior in vitro

RFM van Oers, EG Rens, DJ LaValley… - PLoS computational …, 2014 - journals.plos.org
In vitro cultures of endothelial cells are a widely used model system of the collective
behavior of endothelial cells during vasculogenesis and angiogenesis. When seeded in an …

[HTML][HTML] Mathematical models of developmental vascular remodelling: A review

JR Crawshaw, JA Flegg, MO Bernabeu… - PLoS Computational …, 2023 - journals.plos.org
Over the past 40 years, there has been a strong focus on the development of mathematical
models of angiogenesis, while developmental remodelling has received little such attention …

A paper-based invasion assay: Assessing chemotaxis of cancer cells in gradients of oxygen

B Mosadegh, MR Lockett, KT Minn, KA Simon, K Gilbert… - Biomaterials, 2015 - Elsevier
This work describes a 3D, paper-based assay that can isolate sub-populations of cells
based on their invasiveness (ie, distance migrated in a hydrogel) in a gradient of …

[HTML][HTML] Cancer modeling: From mechanistic to data-driven approaches, and from fundamental insights to clinical applications

S Bekisz, L Geris - Journal of Computational Science, 2020 - Elsevier
Cancer is still one of the major causes of death worldwide. Even if its comprehension is
improving continuously, the complexity and heterogeneity of this group of diseases …

Global optimization, local adaptation, and the role of growth in distribution networks

H Ronellenfitsch, E Katifori - Physical review letters, 2016 - APS
Highly optimized complex transport networks serve crucial functions in many man-made and
natural systems such as power grids and plant or animal vasculature. Often, the relevant …

[HTML][HTML] Biologically-based mathematical modeling of tumor vasculature and angiogenesis via time-resolved imaging data

DA Hormuth, CM Phillips, C Wu, EABF Lima… - Cancers, 2021 - mdpi.com
Simple Summary The recruitment of new vasculature via angiogenesis is a critical
component of tumor development, which fundamentally influences tumor growth and …

Towards the generation of synthetic images of palm vein patterns: A review

EH Salazar-Jurado, R Hernández-García… - Information …, 2023 - Elsevier
With the recent success of computer vision and deep learning, remarkable progress has
been achieved on automatic personal recognition using vein biometrics. However, collecting …