Chemistry, structure and function of approved oligonucleotide therapeutics

M Egli, M Manoharan - Nucleic Acids Research, 2023 - academic.oup.com
Eighteen nucleic acid therapeutics have been approved for treatment of various diseases in
the last 25 years. Their modes of action include antisense oligonucleotides (ASOs), splice …

Quadruplex nucleic acids as novel therapeutic targets

S Neidle - Journal of medicinal chemistry, 2016 - ACS Publications
Quadruplex-forming sequences are widely prevalent in human and other genomes,
including bacterial ones. These sequences are over-represented in eukaryotic telomeres …

RNA G-quadruplexes: emerging mechanisms in disease

A Cammas, S Millevoi - Nucleic acids research, 2017 - academic.oup.com
Abstract RNA G-quadruplexes (G4s) are formed by G-rich RNA sequences in protein-coding
(mRNA) and non-coding (ncRNA) transcripts that fold into a four-stranded conformation …

Solution Structure of a G‐quadruplex Bound to the Bisquinolinium Compound Phen‐DC3

WJ Chung, B Heddi, F Hamon… - Angewandte Chemie …, 2014 - Wiley Online Library
Phen‐DC3 is a highly promising compound that specifically targets G‐quadruplexes, with
potent biological effects observed in vivo. We used NMR spectroscopy to solve the structure …

Structure-based design and evaluation of naphthalene diimide G-quadruplex ligands as telomere targeting agents in pancreatic cancer cells

M Micco, GW Collie, AG Dale… - Journal of medicinal …, 2013 - ACS Publications
Tetra-substituted naphthalene diimide (ND) derivatives with positively charged termini are
potent stabilizers of human telomeric and gene promoter DNA quadruplexes and inhibit the …

Thermal denaturation of DNA G-quadruplexes and their complexes with ligands: thermodynamic analysis of the multiple states revealed by mass spectrometry

A Marchand, F Rosu, R Zenobi… - Journal of the American …, 2018 - ACS Publications
Designing ligands targeting G-quadruplex nucleic acid structures and affecting cellular
processes is complicated because there are multiple target sequences and some are …

Ligand binding to telomeric G-quadruplex DNA investigated by funnel-metadynamics simulations

F Moraca, J Amato, F Ortuso, A Artese… - Proceedings of the …, 2017 - National Acad Sciences
G-quadruplexes (G4s) are higher-order DNA structures typically present at promoter regions
of genes and telomeres. Here, the G4 formation decreases the replicative DNA at each cell …

Selective recognition of c-MYC Pu22 G-quadruplex by a fluorescent probe

Q Zhai, C Gao, J Ding, Y Zhang, B Islam… - Nucleic Acids …, 2019 - academic.oup.com
Nucleic acid mimics of fluorescent proteins can be valuable tools to locate and image
functional biomolecules in cells. Stacking between the internal G-quartet, formed in the …

Structurally diverse G-quadruplexes as the noncanonical nucleic acid drug target for live cell imaging and antibacterial study

BX Zheng, J Yu, W Long, KH Chan… - Chemical …, 2023 - pubs.rsc.org
The formation of G-quadruplex structures (G4s) in vitro from guanine (G)-rich nucleic acid
sequences of DNA and RNA stabilized with monovalent cations, typically K+ and Na+, under …

Solution and Gas-Phase Stability of DNA Junctions from Temperature-Controlled Electrospray Ionization and Surface-Induced Dissociation

A Pruška, JA Harrison, A Granzhan… - Analytical …, 2023 - ACS Publications
DNA three-way junction (TWJ) structures transiently form during key cellular processes such
as transcription, replication, and DNA repair. Despite their significance, the thermodynamics …