A Novel and Quantitative Detection Assay (effluxR) for Identifying Efflux-Associated Resistance Genes Using Multiplex Digital PCR in Clinical Isolates of …

N Rattanachak, S Weawsiangsang, RA Baldock… - Methods and …, 2023 - mdpi.com
The rise of multidrug resistance of Pseudomonas aeruginosa highlights an increased need
for selective and precise antimicrobial treatment. Drug efflux pumps are one of the major …

S-plot2: rapid visual and statistical analysis of genomic sequences

L Kalesinskas, E Cudone, Y Fofanov… - Evolutionary …, 2018 - journals.sagepub.com
With the daily release of data from whole genome sequencing projects, tools to facilitate
comparative studies are hard-pressed to keep pace. Graphical software solutions can …

A clustering package for nucleotide sequences using Laplacian Eigenmaps and Gaussian Mixture Model

M Bruneau, T Mottet, S Moulin, M Kerbiriou… - Computers in biology …, 2018 - Elsevier
In this article, a new Python package for nucleotide sequences clustering is proposed. This
package, freely available on-line, implements a Laplacian eigenmap embedding and a …

Evolution of bacteria seen through their essential genes: the case of Pseudomonas aeruginosa and Azotobacter vinelandii

E Martínez-Carranza, GY Ponce-Soto… - …, 2019 - microbiologyresearch.org
Pseudomonas aeruginosa is a metabolically versatile bacterium and also an important
opportunistic pathogen. It has a remarkable genomic structure since the genetic information …

Class 1, 2 integron genes distribution in Pseudomonas aeruginosa isolated from clinical specimens

HQ Raheem, EF Hussein… - Research Journal of …, 2022 - indianjournals.com
Pseudomonas aeruginosa, a Gram-negative human pathogen, P. aeruginosa is lone of the
furthermost common hospital pathogens also is a chief concern, particularly in immune …

Comparative genomic analysis of Pseudomonas aeruginosa phage PaMx25 reveals a novel siphovirus group related to phages infecting hosts of different taxonomic …

V Flores, O Sepúlveda-Robles, A Cazares… - Archives of …, 2017 - Springer
Bacteriophages (phages) are estimated to be the most abundant and diverse entities in the
biosphere harboring vast amounts of novel genetic information. Despite the genetic diversity …

Biodiversity of epiphytic Pseudomonas strains isolated from leaves of pepper and lettuce

SA Medina-Salazar, M Rodríguez-Aguilar… - Biologia, 2020 - Springer
Plants are complex biological systems under constant and dynamic interaction with diverse
microbial communities which influence their development. The microbial communities …

Gene loss and acquisition in lineages of bacteria evolving in a human host environment

M Gabrielaite, HK Johansen, S Molin, FC Nielsen… - BioRxiv, 2020 - biorxiv.org
While genome analyses have documented that there are differences in the gene repertoire
between evolutionary distant lineages of the same bacterial species, less is known about …

Analyses of Livestock-Associated Staphylococcus aureus Pan-Genomes Suggest Virulence Is Not Primary Interest in Evolution of Its Genome

RT Rao, N Sivakumar, K Jayakumar - OMICS: A Journal of …, 2019 - liebertpub.com
Staphylococcus aureus is not only part of normal flora but also an opportunistic pathogen
relevant to microbial genomics, public health, and veterinary medicine. In addition to being a …

Monomicrobial necrotizing fasciitis and sepsis caused by Pseudomonas aeruginosa and Pseudomonas fluorescens: a series of ten cases

JL Chen, TY Huang, LT Kuo, KC Huang… - Japanese Journal of …, 2022 - jstage.jst.go.jp
抄録 Monomicrobial necrotizing fasciitis caused by Pseudomonas species is a rare infection.
This study aimed to elucidate the specific characteristics and clinical outcomes of necrotizing …