The role of microorganisms in petroleum degradation: Current development and prospects

X Chunyan, MA Qaria, X Qi, Z Daochen - Science of The Total Environment, 2023 - Elsevier
Petroleum hydrocarbon compounds are persistent organic pollutants, which can cause
permanent damage to ecosystems due to their biomagnification. Bioremediation of oil is …

[HTML][HTML] Engineering synthetic RNA devices for cell control

PB Dykstra, M Kaplan, CD Smolke - Nature Reviews Genetics, 2022 - nature.com
The versatility of RNA in sensing and interacting with small molecules, proteins and other
nucleic acids while encoding genetic instructions for protein translation makes it a powerful …

[HTML][HTML] Approaches to genetic tool development for rapid domestication of non-model microorganisms

LA Riley, AM Guss - Biotechnology for Biofuels, 2021 - Springer
Non-model microorganisms often possess complex phenotypes that could be important for
the future of biofuel and chemical production. They have received significant interest the last …

High-throughput screening of cell-free riboswitches by fluorescence-activated droplet sorting

T Tabuchi, Y Yokobayashi - Nucleic acids research, 2022 - academic.oup.com
Cell-free systems that display complex functions without using living cells are emerging as
new platforms to test our understanding of biological systems as well as for practical …

Transcriptome-wide probing reveals RNA thermometers that regulate translation of glycerol permease genes in Bacillus subtilis

EA Jolley, H Yakhnin, DC Tack, P Babitzke… - RNA, 2023 - rnajournal.cshlp.org
RNA structure regulates bacterial gene expression by several distinct mechanisms via
environmental and cellular stimuli, one of which is temperature. While some genome-wide …

Protein‐Encoding Free‐Standing RNA Hydrogel for Sub‐Compartmentalized Translation

SY Ahn, J Kim, S Vellampatti, S Oh, YT Lim… - Advanced …, 2022 - Wiley Online Library
RNA can self‐fold into complex structures that can serve as major biological regulators in
protein synthesis and in catalysis. Due to the abundance of structural primitives and …

Engineering a Synthetic Dopamine-Responsive Riboswitch for In Vitro Biosensing

SV Harbaugh, AD Silverman, YG Chushak… - ACS synthetic …, 2022 - ACS Publications
The detection of chemicals using natural allosteric transcription factors is a powerful strategy
for point-of-use molecular sensing, particularly using fieldable cell-free gene expression …

[HTML][HTML] Re-engineering plant phenylpropanoid metabolism with the aid of synthetic biosensors

SS Ferreira, MS Antunes - Frontiers in Plant Science, 2021 - frontiersin.org
Phenylpropanoids comprise a large class of specialized plant metabolites with many
important applications, including pharmaceuticals, food nutrients, colorants, fragrances, and …

Intelligent host engineering for metabolic flux optimisation in biotechnology

LJ Munro, DB Kell - Biochemical Journal, 2021 - portlandpress.com
Optimising the function of a protein of length N amino acids by directed evolution involves
navigating a 'search space'of possible sequences of some 20 N. Optimising the expression …

Efficient quantitative monitoring of translational initiation by RelE cleavage

CM Focht, SA Strobel - Nucleic Acids Research, 2022 - academic.oup.com
The sequences of the 5′ untranslated regions (5′-UTRs) of mRNA alter gene expression
across domains of life. Transcriptional modulators can be easily assayed through …