IMGT/RobustpMHC: Robust Training for class-I MHC Peptide Binding Prediction
The accurate prediction of peptide-MHC class I binding probabilities is a critical endeavor in
immunoinformatics, with broad implications for vaccine development and immunotherapies …
immunoinformatics, with broad implications for vaccine development and immunotherapies …
Computational Design for Identification of Human Anti-MUC1 Heteroclitic Peptides in the Treatment of HER2-Positive Breast Cancer through Neural Network Training …
Aims: Generation of the human anti-MUC1 peptide through neural network training and
monomeric design method. Analyzing 9-mer peptide potential computationally for treatment …
monomeric design method. Analyzing 9-mer peptide potential computationally for treatment …
Steric recognition of T‐cell receptor contact residues is required to map mutant epitopes by immunoinformatical programmes
SC Hsu, CP Chang, CY Tsai, SH Hsieh… - …, 2012 - Wiley Online Library
Summary MHC class I‐restricted CD8 T‐lymphocyte epitopes comprise anchor motifs, T‐cell
receptor (TCR) contact residues and the peptide backbone. Serial variant epitopes with …
receptor (TCR) contact residues and the peptide backbone. Serial variant epitopes with …
Using databases and data mining in vaccinology
Throughout time functional immunology has accumulated vast amounts of quantitative and
qualitative data relevant to the design and discovery of vaccines. Such data includes, but is …
qualitative data relevant to the design and discovery of vaccines. Such data includes, but is …
Shift-invariant adaptive double threading: learning MHC II–peptide binding
N Zaitlen, M Reyes-Gomez, D Heckerman… - Journal of …, 2008 - liebertpub.com
The major histocompatibility complex (MHC) plays important roles in the workings of the
human immune system. Specificity of MHC binding to peptide fragments from cellular and …
human immune system. Specificity of MHC binding to peptide fragments from cellular and …
MHC binding prediction with KernelRLSpan and its variations
Antigenic peptides presented to T cells by MHC molecules are essential for T or B cells to
proliferate and eventually differentiate into effector cells or memory cells. MHC binding …
proliferate and eventually differentiate into effector cells or memory cells. MHC binding …
[HTML][HTML] Development of a Novel In Silico Docking Simulation Model for the Fine HIV-1 Cytotoxic T Lymphocyte Epitope Mapping
M Mori, K Matsuki, T Maekawa, M Tanaka… - 2012 - journals.plos.org
Introduction Class I HLA's polymorphism has hampered CTL epitope mapping with
laborious experiments. Objectives are 1) to evaluate the novel in silico model in predicting …
laborious experiments. Objectives are 1) to evaluate the novel in silico model in predicting …
Shift-invariant predictions
Shift invariant predictors are described herein. By way of example, a system for predicting
binding information relating to a binding of a protein and a ligand can include a trained …
binding information relating to a binding of a protein and a ligand can include a trained …
QSAR and the Prediction of T-Cell Epitopes
IA Doytchinova, DR Flower - Current Proteomics, 2008 - ingentaconnect.com
Quantitative structure-activity relationships (QSAR) is a well established ligand-based
approach to drug design. It correlates changes in the chemical structure of a series of …
approach to drug design. It correlates changes in the chemical structure of a series of …
Reverse immunology: From peptide sequence to tumor-killing human T-cell clones
C Vanhaver, M Gordon-Alonso, A Bayard… - Methods in …, 2020 - Elsevier
Recent advances in next generation sequencing expanded the availability of tumor
mutanome data that list the mutations present in cancer cells. Mutated proteins are an …
mutanome data that list the mutations present in cancer cells. Mutated proteins are an …