IMGT/RobustpMHC: Robust Training for class-I MHC Peptide Binding Prediction

A Kushwaha, P Duroux, V Giudicelli, K Todorov… - bioRxiv, 2023 - biorxiv.org
The accurate prediction of peptide-MHC class I binding probabilities is a critical endeavor in
immunoinformatics, with broad implications for vaccine development and immunotherapies …

Computational Design for Identification of Human Anti-MUC1 Heteroclitic Peptides in the Treatment of HER2-Positive Breast Cancer through Neural Network Training …

A Behl, NN Das, KK Sharma, N Sharma… - Current Cancer Drug …, 2023 - ingentaconnect.com
Aims: Generation of the human anti-MUC1 peptide through neural network training and
monomeric design method. Analyzing 9-mer peptide potential computationally for treatment …

Steric recognition of T‐cell receptor contact residues is required to map mutant epitopes by immunoinformatical programmes

SC Hsu, CP Chang, CY Tsai, SH Hsieh… - …, 2012 - Wiley Online Library
Summary MHC class I‐restricted CD8 T‐lymphocyte epitopes comprise anchor motifs, T‐cell
receptor (TCR) contact residues and the peptide backbone. Serial variant epitopes with …

Using databases and data mining in vaccinology

MN Davies, P Guan, MJ Blythe, J Salomon… - Expert opinion on …, 2007 - Taylor & Francis
Throughout time functional immunology has accumulated vast amounts of quantitative and
qualitative data relevant to the design and discovery of vaccines. Such data includes, but is …

Shift-invariant adaptive double threading: learning MHC II–peptide binding

N Zaitlen, M Reyes-Gomez, D Heckerman… - Journal of …, 2008 - liebertpub.com
The major histocompatibility complex (MHC) plays important roles in the workings of the
human immune system. Specificity of MHC binding to peptide fragments from cellular and …

MHC binding prediction with KernelRLSpan and its variations

WJ Shen, YT Wei, X Guo, S Smale, HS Wong… - Journal of Immunological …, 2014 - Elsevier
Antigenic peptides presented to T cells by MHC molecules are essential for T or B cells to
proliferate and eventually differentiate into effector cells or memory cells. MHC binding …

[HTML][HTML] Development of a Novel In Silico Docking Simulation Model for the Fine HIV-1 Cytotoxic T Lymphocyte Epitope Mapping

M Mori, K Matsuki, T Maekawa, M Tanaka… - 2012 - journals.plos.org
Introduction Class I HLA's polymorphism has hampered CTL epitope mapping with
laborious experiments. Objectives are 1) to evaluate the novel in silico model in predicting …

Shift-invariant predictions

N Jojic, DE Heckerman, NA Zaitlen… - US Patent …, 2014 - Google Patents
Shift invariant predictors are described herein. By way of example, a system for predicting
binding information relating to a binding of a protein and a ligand can include a trained …

QSAR and the Prediction of T-Cell Epitopes

IA Doytchinova, DR Flower - Current Proteomics, 2008 - ingentaconnect.com
Quantitative structure-activity relationships (QSAR) is a well established ligand-based
approach to drug design. It correlates changes in the chemical structure of a series of …

Reverse immunology: From peptide sequence to tumor-killing human T-cell clones

C Vanhaver, M Gordon-Alonso, A Bayard… - Methods in …, 2020 - Elsevier
Recent advances in next generation sequencing expanded the availability of tumor
mutanome data that list the mutations present in cancer cells. Mutated proteins are an …