Integrating fossil observations into phylogenetics using the fossilized birth–death model
Over the past decade, a new set of methods for estimating dated trees has emerged.
Originally referred to as the fossilized birth–death (FBD) process, this single model has …
Originally referred to as the fossilized birth–death (FBD) process, this single model has …
Seeing the rainbow: mechanisms underlying spectral sensitivity in teleost fishes
KL Carleton, D Escobar-Camacho… - Journal of …, 2020 - journals.biologists.com
Among vertebrates, teleost eye diversity exceeds that found in all other groups. Their
spectral sensitivities range from ultraviolet to red, and the number of visual pigments varies …
spectral sensitivities range from ultraviolet to red, and the number of visual pigments varies …
BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis
R Bouckaert, TG Vaughan… - PLoS computational …, 2019 - journals.plos.org
Elaboration of Bayesian phylogenetic inference methods has continued at pace in recent
years with major new advances in nearly all aspects of the joint modelling of evolutionary …
years with major new advances in nearly all aspects of the joint modelling of evolutionary …
Evolution and comparative genomics of the most common Trichoderma species
CP Kubicek, AS Steindorff, K Chenthamara… - BMC genomics, 2019 - Springer
Background The growing importance of the ubiquitous fungal genus Trichoderma
(Hypocreales, Ascomycota) requires understanding of its biology and evolution. Many …
(Hypocreales, Ascomycota) requires understanding of its biology and evolution. Many …
Phylogenomics uncovers early hybridization and adaptive loci shaping the radiation of Lake Tanganyika cichlid fishes
Lake Tanganyika is the oldest and phenotypically most diverse of the three East African
cichlid fish adaptive radiations. It is also the cradle for the younger parallel haplochromine …
cichlid fish adaptive radiations. It is also the cradle for the younger parallel haplochromine …
Vision using multiple distinct rod opsins in deep-sea fishes
Vertebrate vision is accomplished through light-sensitive photopigments consisting of an
opsin protein bound to a chromophore. In dim light, vertebrates generally rely on a single …
opsin protein bound to a chromophore. In dim light, vertebrates generally rely on a single …
Bayesian divergence-time estimation with genome-wide single-nucleotide polymorphism data of sea catfishes (Ariidae) supports Miocene closure of the Panamanian …
M Stange, MR Sánchez-Villagra… - Systematic …, 2018 - academic.oup.com
The closure of the Isthmus of Panama has long been considered to be one of the best
defined biogeographic calibration points for molecular divergence-time estimation …
defined biogeographic calibration points for molecular divergence-time estimation …
Unusual diversity of sex chromosomes in African cichlid fishes
WJ Gammerdinger, TD Kocher - Genes, 2018 - mdpi.com
African cichlids display a remarkable assortment of jaw morphologies, pigmentation
patterns, and mating behaviors. In addition to this previously documented diversity, recent …
patterns, and mating behaviors. In addition to this previously documented diversity, recent …
Disentangling incomplete lineage sorting and introgression to refine species-tree estimates for Lake Tanganyika cichlid fishes
Adaptive radiation is thought to be responsible for the evolution of a great portion of the past
and present diversity of life. Instances of adaptive radiation, characterized by the rapid …
and present diversity of life. Instances of adaptive radiation, characterized by the rapid …
The genomic timeline of cichlid fish diversification across continents
Cichlid fishes are celebrated for their vast taxonomic, phenotypic, and ecological diversity;
however, a central aspect of their evolution—the timeline of their diversification—remains …
however, a central aspect of their evolution—the timeline of their diversification—remains …