Integrating fossil observations into phylogenetics using the fossilized birth–death model

AM Wright, DW Bapst, J Barido-Sottani… - Annual Review of …, 2022 - annualreviews.org
Over the past decade, a new set of methods for estimating dated trees has emerged.
Originally referred to as the fossilized birth–death (FBD) process, this single model has …

Seeing the rainbow: mechanisms underlying spectral sensitivity in teleost fishes

KL Carleton, D Escobar-Camacho… - Journal of …, 2020 - journals.biologists.com
Among vertebrates, teleost eye diversity exceeds that found in all other groups. Their
spectral sensitivities range from ultraviolet to red, and the number of visual pigments varies …

BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis

R Bouckaert, TG Vaughan… - PLoS computational …, 2019 - journals.plos.org
Elaboration of Bayesian phylogenetic inference methods has continued at pace in recent
years with major new advances in nearly all aspects of the joint modelling of evolutionary …

Evolution and comparative genomics of the most common Trichoderma species

CP Kubicek, AS Steindorff, K Chenthamara… - BMC genomics, 2019 - Springer
Background The growing importance of the ubiquitous fungal genus Trichoderma
(Hypocreales, Ascomycota) requires understanding of its biology and evolution. Many …

Phylogenomics uncovers early hybridization and adaptive loci shaping the radiation of Lake Tanganyika cichlid fishes

I Irisarri, P Singh, S Koblmüller… - Nature …, 2018 - nature.com
Lake Tanganyika is the oldest and phenotypically most diverse of the three East African
cichlid fish adaptive radiations. It is also the cradle for the younger parallel haplochromine …

Vision using multiple distinct rod opsins in deep-sea fishes

Z Musilova, F Cortesi, M Matschiner, WIL Davies… - Science, 2019 - science.org
Vertebrate vision is accomplished through light-sensitive photopigments consisting of an
opsin protein bound to a chromophore. In dim light, vertebrates generally rely on a single …

Bayesian divergence-time estimation with genome-wide single-nucleotide polymorphism data of sea catfishes (Ariidae) supports Miocene closure of the Panamanian …

M Stange, MR Sánchez-Villagra… - Systematic …, 2018 - academic.oup.com
The closure of the Isthmus of Panama has long been considered to be one of the best
defined biogeographic calibration points for molecular divergence-time estimation …

Unusual diversity of sex chromosomes in African cichlid fishes

WJ Gammerdinger, TD Kocher - Genes, 2018 - mdpi.com
African cichlids display a remarkable assortment of jaw morphologies, pigmentation
patterns, and mating behaviors. In addition to this previously documented diversity, recent …

Disentangling incomplete lineage sorting and introgression to refine species-tree estimates for Lake Tanganyika cichlid fishes

BS Meyer, M Matschiner, W Salzburger - Systematic Biology, 2017 - academic.oup.com
Adaptive radiation is thought to be responsible for the evolution of a great portion of the past
and present diversity of life. Instances of adaptive radiation, characterized by the rapid …

The genomic timeline of cichlid fish diversification across continents

M Matschiner, A Böhne, F Ronco… - Nature communications, 2020 - nature.com
Cichlid fishes are celebrated for their vast taxonomic, phenotypic, and ecological diversity;
however, a central aspect of their evolution—the timeline of their diversification—remains …