[HTML][HTML] Quantitative surface field analysis: learning causal models to predict ligand binding affinity and pose

AE Cleves, AN Jain - Journal of computer-aided molecular design, 2018 - Springer
We introduce the QuanSA method for inducing physically meaningful field-based models of
ligand binding pockets based on structure-activity data alone. The method is closely related …

Prediction of off-target drug effects through data fusion

ER Yera, AE Cleves, AN Jain - Biocomputing 2014, 2014 - World Scientific
We present a probabilistic data fusion framework that combines multiple computational
approaches for drawing relationships between drugs and targets. The approach has special …

[HTML][HTML] A structure-guided approach for protein pocket modeling and affinity prediction

R Varela, AE Cleves, R Spitzer, AN Jain - Journal of Computer-Aided …, 2013 - Springer
Binding affinity prediction is frequently addressed using computational models constructed
solely with molecular structure and activity data. We present a hybrid structure-guided …

When Inhibitors Do Not Inhibit: Critical Evaluation of Rational Drug Design Targeting Chorismate Mutase from Mycobacterium tuberculosis

S Munack, V Leroux, K Roderer, M Ökvist… - Chemistry & …, 2012 - Wiley Online Library
Tuberculosis (TB) is a devastating disease that claims millions of lives every year. Hindered
access or non‐compliance to medication, especially in developing countries, led to drug …

Machine learning approaches for drug virtual screening

B Playe - 2019 - pastel.hal.science
The rational drug discovery process has limited success despite all the advances in
understanding diseases, and technological breakthroughs. Indeed, the process of drug …

[HTML][HTML] Extrapolative prediction using physically-based QSAR

AE Cleves, AN Jain - Journal of Computer-Aided Molecular Design, 2016 - Springer
Surflex-QMOD integrates chemical structure and activity data to produce physically-realistic
models for binding affinity prediction. Here, we apply QMOD to a 3D-QSAR benchmark …

Quality of care in skilled nursing facilities

KM Perkins - 2013 - search.proquest.com
The population segment aged 65 and older is rapidly increasing. As the population
continues to age, the demand for long-term health care services, such as skilled nursing …

Chaplaincy: A Practical Approach to Caring for the Human Spirit

S Fair - 2021 - digitalcommons.liberty.edu
This DMIN project is based on the Pastoral Ministry program at Nyack College, which
publicly promotes that it leads the student to become a professional in the ministry context …

Méthodes d'apprentissage statistique pour le criblage virtuel de médicament

B Playe - 2019 - theses.fr
Résumé Le processus de découverte de médicaments a un succès limité malgré tous les
progrès réalisés. En effet, on estime actuellement que le développement d'un médicament …

Debiasing Algorithms for Protein Ligand Binding Data do not Improve Generalisation

V Sundar, L Colwell - 2019 - chemrxiv.org
The structured nature of chemical data means machine learning models trained to predict
protein-ligand binding risk overfitting the data, impairing their ability to generalise and make …