[HTML][HTML] Influenza interaction with cocirculating pathogens and its impact on surveillance, pathogenesis, and epidemic profile: A key role for mathematical modelling

L Opatowski, M Baguelin, RM Eggo - PLoS pathogens, 2018 - journals.plos.org
Evidence is mounting that influenza virus interacts with other pathogens colonising or
infecting the human respiratory tract. Taking into account interactions with other pathogens …

[HTML][HTML] Covasim: an agent-based model of COVID-19 dynamics and interventions

CC Kerr, RM Stuart, D Mistry… - PLOS Computational …, 2021 - journals.plos.org
The COVID-19 pandemic has created an urgent need for models that can project epidemic
trends, explore intervention scenarios, and estimate resource needs. Here we describe the …

[HTML][HTML] Possible future waves of SARS-CoV-2 infection generated by variants of concern with a range of characteristics

L Dyson, EM Hill, S Moore, J Curran-Sebastian… - Nature …, 2021 - nature.com
Viral reproduction of SARS-CoV-2 provides opportunities for the acquisition of
advantageous mutations, altering viral transmissibility, disease severity, and/or allowing …

Forecasting epidemiological and evolutionary dynamics of infectious diseases

S Gandon, T Day, CJE Metcalf, BT Grenfell - Trends in ecology & evolution, 2016 - cell.com
Mathematical models have been powerful tools in developing mechanistic understanding of
infectious diseases. Furthermore, they have allowed detailed forecasting of epidemiological …

The rapid replacement of the SARS-CoV-2 Delta variant by Omicron (B. 1.1. 529) in England

RS Paton, CE Overton, T Ward - Science Translational Medicine, 2022 - science.org
The emergence of the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) B.
1.1. 529 (Omicron) variant caused international concern due to its rapid spread in Southern …

Pathogen diversity in meta-population networks

Y Nie, X Zhong, T Lin, W Wang - Chaos, Solitons & Fractals, 2023 - Elsevier
The pathogen diversity means that multiple strains coexist, and widely exist in the biology
systems. The new mutation of SARS-CoV-2 leading to worldwide pathogen diversity is a …

[HTML][HTML] Key challenges for respiratory virus surveillance while transitioning out of acute phase of COVID-19 pandemic

O Eales, MJ Plank, BJ Cowling… - Emerging Infectious …, 2024 - ncbi.nlm.nih.gov
To support the ongoing management of viral respiratory diseases while transitioning out of
the acute phase of the COVID-19 pandemic, many countries are moving toward an …

[HTML][HTML] Temporal dynamics of co-circulating lineages of porcine reproductive and respiratory syndrome virus

IAD Paploski, C Corzo, A Rovira, MP Murtaugh… - Frontiers in …, 2019 - frontiersin.org
Porcine Reproductive and Respiratory Syndrome Virus (PRRSV) is the most important
endemic pathogen in the US swine industry. Despite control efforts involving improved …

[HTML][HTML] Ecological and evolutionary dynamics of multi-strain RNA viruses

DN Makau, S Lycett, M Michalska-Smith… - Nature Ecology & …, 2022 - nature.com
Potential interactions among co-circulating viral strains in host populations are often
overlooked in the study of virus transmission. However, these interactions probably shape …

Multi-scale modelling reveals that early super-spreader events are a likely contributor to novel variant predominance

A Goyal, DB Reeves, JT Schiffer - Journal of the Royal …, 2022 - royalsocietypublishing.org
The emergence of new SARS-CoV-2 variants of concern (VOC) has hampered international
efforts to contain the COVID-19 pandemic. VOCs have been characterized to varying …