Vital for viruses: intrinsically disordered proteins

HJ Dyson - Journal of Molecular Biology, 2023 - Elsevier
Viruses infect all kingdoms of life; their genomes vary from DNA to RNA and in size from 2kB
to 1 MB or more. Viruses frequently employ disordered proteins, that is, protein products of …

Electrostatic interactions in molecular recognition of intrinsically disordered proteins

J Yang, Y Zeng, Y Liu, M Gao, S Liu, Z Su… - Journal of …, 2020 - Taylor & Francis
Intrinsically disordered proteins (IDPs) and intrinsically disordered regions (IDRs) are
abundant in all species. They play critical roles in many cellular processes, including …

[HTML][HTML] Intrinsically disordered proteins in chronic diseases

P Kulkarni, VN Uversky - Biomolecules, 2019 - mdpi.com
It is now increasingly evident that a large fraction of the human proteome comprises proteins
that, under physiological conditions, lack fixed, ordered 3D structures as a whole or have …

Quantitative cooperative binding model for intrinsically disordered proteins interacting with nanomaterials

DW Li, M Xie, R Brüschweiler - Journal of the American …, 2020 - ACS Publications
Intrinsically disordered proteins (IDPs) can display a broad spectrum of binding modes and
highly variable binding affinities when interacting with both biological and nonbiological …

Heterogeneous and allosteric role of surface hydration for protein–ligand binding

J Shi, JH Cho, W Hwang - Journal of Chemical Theory and …, 2023 - ACS Publications
Atomistic-level understanding of surface hydration mediating protein–protein interactions
and ligand binding has been a challenge due to the dynamic nature of water molecules near …

What are we missing by not measuring the net charge of proteins?

CT Zahler, BF Shaw - Chemistry–A European Journal, 2019 - Wiley Online Library
The net electrostatic charge (Z) of a folded protein in solution represents a bird's eye view of
its surface potentials—including contributions from tightly bound metal, solvent, buffer, and …

[HTML][HTML] Molecular Basis of the Ternary Interaction between NS1 of the 1918 Influenza A Virus, PI3K, and CRK

A Dubrow, S Lin, N Savage, Q Shen, JH Cho - Viruses, 2020 - mdpi.com
The 1918 influenza A virus (IAV) caused the worst flu pandemic in human history. Non-
structural protein 1 (NS1) is an important virulence factor of the 1918 IAV and antagonizes …

The formation of a fuzzy complex in the negative arm regulates the robustness of the circadian clock

MS Jankowski, D Griffith, DG Shastry, JF Pelham… - bioRxiv, 2022 - biorxiv.org
The circadian clock times cellular processes to the day/night cycle via a Transcription-
Translation negative Feedback Loop (TTFL). However, a mechanistic understanding of the …

Concomitant disorder and high‐affinity zinc binding in the human zinc‐and iron‐regulated transport protein 4 intracellular loop

EM Bafaro, MW Maciejewski, JC Hoch… - Protein …, 2019 - Wiley Online Library
The human zinc‐and iron‐regulated transport protein 4 (hZIP4) protein is the major plasma
membrane protein responsible for the uptake of zinc in the body, and as such it plays a key …

[HTML][HTML] A disordered encounter complex is central to the yeast Abp1p SH3 domain binding pathway

GJ Gerlach, R Carrock, R Stix, EJ Stollar… - PLoS Computational …, 2020 - journals.plos.org
Protein-protein interactions are involved in a wide range of cellular processes. These
interactions often involve intrinsically disordered proteins (IDPs) and protein binding …