Conditional and joint multiple-SNP analysis of GWAS summary statistics identifies additional variants influencing complex traits
We present an approximate conditional and joint association analysis that can use summary-
level statistics from a meta-analysis of genome-wide association studies (GWAS) and …
level statistics from a meta-analysis of genome-wide association studies (GWAS) and …
A linear complexity phasing method for thousands of genomes
O Delaneau, J Marchini, JF Zagury - Nature methods, 2012 - nature.com
Human-disease etiology can be better understood with phase information about diploid
sequences. We present a method for estimating haplotypes, using genotype data from …
sequences. We present a method for estimating haplotypes, using genotype data from …
Exome sequencing links mutations in PARN and RTEL1 with familial pulmonary fibrosis and telomere shortening
Idiopathic pulmonary fibrosis (IPF) is an age-related disease featuring progressive lung
scarring. To elucidate the molecular basis of IPF, we performed exome sequencing of …
scarring. To elucidate the molecular basis of IPF, we performed exome sequencing of …
Evolution and functional impact of rare coding variation from deep sequencing of human exomes
As a first step toward understanding how rare variants contribute to risk for complex
diseases, we sequenced 15,585 human protein-coding genes to an average median depth …
diseases, we sequenced 15,585 human protein-coding genes to an average median depth …
[HTML][HTML] A map of human genome variation from population scale sequencing
1000 Genomes Project Consortium - Nature, 2010 - ncbi.nlm.nih.gov
Abstract The 1000 Genomes Project aims to provide a deep characterisation of human
genome sequence variation as a foundation for investigating the relationship between …
genome sequence variation as a foundation for investigating the relationship between …
Improved imputation of low-frequency and rare variants using the UK10K haplotype reference panel
Imputing genotypes from reference panels created by whole-genome sequencing (WGS)
provides a cost-effective strategy for augmenting the single-nucleotide polymorphism (SNP) …
provides a cost-effective strategy for augmenting the single-nucleotide polymorphism (SNP) …
Genomic variation landscape of the human gut microbiome
Whereas large-scale efforts have rapidly advanced the understanding and practical impact
of human genomic variation, the practical impact of variation is largely unexplored in the …
of human genomic variation, the practical impact of variation is largely unexplored in the …
Multiple deeply divergent Denisovan ancestries in Papuans
Genome sequences are known for two archaic hominins—Neanderthals and Denisovans—
which interbred with anatomically modern humans as they dispersed out of Africa. We …
which interbred with anatomically modern humans as they dispersed out of Africa. We …
The (in) famous GWAS P-value threshold revisited and updated for low-frequency variants
Genome-wide association studies (GWAS) have long relied on proposed statistical
significance thresholds to be able to differentiate true positives from false positives. Although …
significance thresholds to be able to differentiate true positives from false positives. Although …
Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture
Bone mineral density (BMD) is the most widely used predictor of fracture risk. We performed
the largest meta-analysis to date on lumbar spine and femoral neck BMD, including 17 …
the largest meta-analysis to date on lumbar spine and femoral neck BMD, including 17 …