Resurrecting surviving Neandertal lineages from modern human genomes

B Vernot, JM Akey - Science, 2014 - science.org
Anatomically modern humans overlapped and mated with Neandertals such that non-
African humans inherit~ 1 to 3% of their genomes from Neandertal ancestors. We identified …

[HTML][HTML] A mega-analysis of genome-wide association studies for major depressive disorder

Major Depressive Disorder Working Group of … - Molecular …, 2013 - ncbi.nlm.nih.gov
Prior genome-wide association studies (GWAS) of major depressive disorder (MDD) have
met with limited success. We sought to increase statistical power to detect disease loci by …

Identifying causal variants at loci with multiple signals of association

F Hormozdiari, E Kostem, EY Kang… - Proceedings of the 5th …, 2014 - dl.acm.org
Although genome-wide association studies have successfully identified thousands of risk
loci for complex traits, only a handful of the biologically causal variants, responsible for …

GSVA: gene set variation analysis for microarray and RNA-seq data

S Hänzelmann, R Castelo, J Guinney - BMC bioinformatics, 2013 - Springer
Background Gene set enrichment (GSE) analysis is a popular framework for condensing
information from gene expression profiles into a pathway or signature summary. The …

A genetic atlas of human admixture history

G Hellenthal, GBJ Busby, G Band, JF Wilson, C Capelli… - science, 2014 - science.org
Modern genetic data combined with appropriate statistical methods have the potential to
contribute substantially to our understanding of human history. We have developed an …

Genome-wide association of polycystic ovary syndrome implicates alterations in gonadotropin secretion in European ancestry populations

MG Hayes, M Urbanek, DA Ehrmann… - Nature …, 2015 - nature.com
Polycystic ovary syndrome (PCOS) is a common, highly heritable complex disorder of
unknown aetiology characterized by hyperandrogenism, chronic anovulation and defects in …

Improving the accuracy and efficiency of identity-by-descent detection in population data

BL Browning, SR Browning - Genetics, 2013 - academic.oup.com
Segments of indentity-by-descent (IBD) detected from high-density genetic data are useful
for many applications, including long-range phase determination, phasing family data …

Genome-wide association studies of 14 agronomic traits in rice landraces

X Huang, X Wei, T Sang, Q Zhao, QI Feng, Y Zhao… - Nature …, 2010 - nature.com
Uncovering the genetic basis of agronomic traits in crop landraces that have adapted to
various agro-climatic conditions is important to world food security. Here we have …

GC content shapes mRNA storage and decay in human cells

M Courel, Y Clément, C Bossevain, D Foretek… - Elife, 2019 - elifesciences.org
mRNA translation and decay appear often intimately linked although the rules of this
interplay are poorly understood. In this study, we combined our recent P-body transcriptome …

Estimating and interpreting FST: the impact of rare variants

G Bhatia, N Patterson, S Sankararaman… - Genome …, 2013 - genome.cshlp.org
In a pair of seminal papers, Sewall Wright and Gustave Malécot introduced F ST as a
measure of structure in natural populations. In the decades that followed, a number of …