APOL1 genetic variants in focal segmental glomerulosclerosis and HIV-associated nephropathy
JB Kopp, GW Nelson, K Sampath… - Journal of the …, 2011 - journals.lww.com
Trypanolytic variants in APOL1, which encodes apolipoprotein L1, associate with kidney
disease in African Americans, but whether APOL1-associated glomerular disease has a …
disease in African Americans, but whether APOL1-associated glomerular disease has a …
Genomewide association studies and assessment of the risk of disease
TA Manolio - New England journal of medicine, 2010 - Mass Medical Soc
Over the past 5 years, genomewide association studies have yielded a wealth of insight into
genes and chromosomal loci that contribute to susceptibility to disease. This article, the …
genes and chromosomal loci that contribute to susceptibility to disease. This article, the …
Linking disease associations with regulatory information in the human genome
Genome-wide association studies have been successful in identifying single nucleotide
polymorphisms (SNPs) associated with a large number of phenotypes. However, an …
polymorphisms (SNPs) associated with a large number of phenotypes. However, an …
ABySS: a parallel assembler for short read sequence data
Widespread adoption of massively parallel deoxyribonucleic acid (DNA) sequencing
instruments has prompted the recent development of de novo short read assembly …
instruments has prompted the recent development of de novo short read assembly …
A decade's perspective on DNA sequencing technology
ER Mardis - Nature, 2011 - nature.com
The decade since the Human Genome Project ended has witnessed a remarkable
sequencing technology explosion that has permitted a multitude of questions about the …
sequencing technology explosion that has permitted a multitude of questions about the …
Genotype imputation for genome-wide association studies
J Marchini, B Howie - Nature Reviews Genetics, 2010 - nature.com
In the past few years genome-wide association (GWA) studies have uncovered a large
number of convincingly replicated associations for many complex human diseases …
number of convincingly replicated associations for many complex human diseases …
Accurate whole human genome sequencing using reversible terminator chemistry
DR Bentley, S Balasubramanian, HP Swerdlow… - nature, 2008 - nature.com
DNA sequence information underpins genetic research, enabling discoveries of important
biological or medical benefit. Sequencing projects have traditionally used long (400–800 …
biological or medical benefit. Sequencing projects have traditionally used long (400–800 …
Haplotype phasing: existing methods and new developments
SR Browning, BL Browning - Nature Reviews Genetics, 2011 - nature.com
Determination of haplotype phase is becoming increasingly important as we enter the era of
large-scale sequencing because many of its applications, such as imputing low-frequency …
large-scale sequencing because many of its applications, such as imputing low-frequency …
De novo assembly and genotyping of variants using colored de Bruijn graphs
Detecting genetic variants that are highly divergent from a reference sequence remains a
major challenge in genome sequencing. We introduce de novo assembly algorithms using …
major challenge in genome sequencing. We introduce de novo assembly algorithms using …
Reconstructing Indian population history
D Reich, K Thangaraj, N Patterson, AL Price, L Singh - Nature, 2009 - nature.com
India has been underrepresented in genome-wide surveys of human variation. We analyse
25 diverse groups in India to provide strong evidence for two ancient populations …
25 diverse groups in India to provide strong evidence for two ancient populations …