The roles of supervised machine learning in systems neuroscience

JI Glaser, AS Benjamin, R Farhoodi, KP Kording - Progress in neurobiology, 2019 - Elsevier
Over the last several years, the use of machine learning (ML) in neuroscience has been
rapidly increasing. Here, we review ML's contributions, both realized and potential, across …

Modeling statistical dependencies in multi-region spike train data

SL Keeley, DM Zoltowski, MC Aoi, JW Pillow - Current opinion in …, 2020 - Elsevier
Neural computations underlying cognition and behavior rely on the coordination of neural
activity across multiple brain areas. Understanding how brain areas interact to process …

Long-term stability of single neuron activity in the motor system

KT Jensen, N Kadmon Harpaz, AK Dhawale… - Nature …, 2022 - nature.com
How an established behavior is retained and consistently produced by a nervous system in
constant flux remains a mystery. One possible solution to ensure long-term stability in motor …

Circumstantial evidence and explanatory models for synapses in large-scale spike recordings

IH Stevenson - arXiv preprint arXiv:2304.09699, 2023 - arxiv.org
Whether, when, and how causal interactions between neurons can be meaningfully studied
from observations of neural activity alone are vital questions in neural data analysis. Here …

Network modeling of dynamic brain interactions predicts emergence of neural information that supports human cognitive behavior

RD Mill, JL Hamilton, EC Winfield, N Lalta… - PLoS …, 2022 - journals.plos.org
How cognitive task behavior is generated by brain network interactions is a central question
in neuroscience. Answering this question calls for the development of novel analysis tools …

The Hybrid Drive: a chronic implant device combining tetrode arrays with silicon probes for layer-resolved ensemble electrophysiology in freely moving mice

M Guardamagna, R Eichler, R Pedrosa… - Journal of Neural …, 2022 - iopscience.iop.org
Objective. Understanding the function of brain cortices requires simultaneous investigation
at multiple spatial and temporal scales and to link neural activity to an animal's behavior. A …

Detecting rhythmic spiking through the power spectra of point process model residuals

K Cox, D Kase, T Znati, R Turner - Journal of Neural Engineering, 2023 - iopscience.iop.org
Objective. Oscillations figure prominently as neurological disease hallmarks and
neuromodulation targets. To detect oscillations in a neuron's spiking, one might attempt to …

Linear-nonlinear cascades capture synaptic dynamics

J Rossbroich, D Trotter, J Beninger… - PLoS computational …, 2021 - journals.plos.org
Short-term synaptic dynamics differ markedly across connections and strongly regulate how
action potentials communicate information. To model the range of synaptic dynamics …

Modeling the short-term dynamics of in vivo excitatory spike transmission

A Ghanbari, N Ren, C Keine, C Stoelzel… - Journal of …, 2020 - Soc Neuroscience
Information transmission in neural networks is influenced by both short-term synaptic
plasticity (STP) as well as nonsynaptic factors, such as after-hyperpolarization currents and …

A convolutional neural network for estimating synaptic connectivity from spike trains

D Endo, R Kobayashi, R Bartolo, BB Averbeck… - Scientific Reports, 2021 - nature.com
The recent increase in reliable, simultaneous high channel count extracellular recordings is
exciting for physiologists and theoreticians because it offers the possibility of reconstructing …