[HTML][HTML] Environmental DNA metabarcoding for benthic monitoring: A review of sediment sampling and DNA extraction methods

J Pawlowski, K Bruce, K Panksep, FI Aguirre… - Science of the Total …, 2022 - Elsevier
Environmental DNA (eDNA) metabarcoding (parallel sequencing of DNA/RNA for
identification of whole communities within a targeted group) is revolutionizing the field of …

Microbial diversity and ecological interactions of microorganisms in the mangrove ecosystem: Threats, vulnerability, and adaptations

K Palit, S Rath, S Chatterjee, S Das - Environmental Science and Pollution …, 2022 - Springer
Mangroves are among the world's most productive ecosystems and a part of the “blue
carbon” sink. They act as a connection between the terrestrial and marine ecosystems …

Hydrocarbon degradation and response of seafloor sediment bacterial community in the northern Gulf of Mexico to light Louisiana sweet crude oil

HP Bacosa, DL Erdner, BE Rosenheim… - The ISME …, 2018 - academic.oup.com
Abstract The Deepwater Horizon (DWH) blowout resulted in the deposition to the seafloor of
up to 4.9% of 200 million gallons of oil released into the Gulf of Mexico. The petroleum …

[HTML][HTML] Metagenomic analysis exhibited the co-metabolism of polycyclic aromatic hydrocarbons by bacterial community from estuarine sediment

S Zhang, Z Hu, H Wang - Environment International, 2019 - Elsevier
The bacterial community from estuarine sediment undertakes the bioremediation and
energy transformation of anthropogenic pollutants especially polycyclic aromatic …

Chronic environmental perturbation influences microbial community assembly patterns

LD Potts, A Douglas, LJ Perez Calderon… - Environmental …, 2022 - ACS Publications
Acute environmental perturbations are reported to induce deterministic microbial community
assembly, while it is hypothesized that chronic perturbations promote development of …

Earth microbiome project and global systems biology

JA Gilbert, JK Jansson, R Knight - MSystems, 2018 - Am Soc Microbiol
Jack A. Gilbert, a, b Founding Editor in Chief, mSystems, Janet K. Jansson, c Senior Editor,
mSystems, Rob Knight, d, e, f Senior Editor, mSystems aBiosciences Division, Argonne …

Rice genotypes and root-associated niches shifted bacterial community in response to pollution of di-(2-ethylhexyl) phthalate (DEHP) for promoting DEHP removal

CL Zhu, HX Lü, YH Huang, J Cheng, H Li, YW Li… - Journal of Hazardous …, 2023 - Elsevier
Organic pollutants influenced root-associated bacterial community. However, the response
variation of root-associated bacterial community among different rice genotypes exposed to …

Ecological response of nitrification to oil spills and its impact on the nitrogen cycle

H Urakawa, S Rajan, ME Feeney… - Environmental …, 2019 - Wiley Online Library
Marine oil spills are catastrophic events that cause massive damage to ecosystems at all
trophic levels. While most of the research has focused on carbon‐degrading …

Microbial and metabolic succession on common building materials under high humidity conditions

S Lax, C Cardona, D Zhao, VJ Winton… - Nature …, 2019 - nature.com
Despite considerable efforts to characterize the microbial ecology of the built environment,
the metabolic mechanisms underpinning microbial colonization and successional dynamics …

Variations of different PAH fractions and bacterial communities during the biological self-purification in the soil vertical profile

L Tang, Z Bao, X Zhao, X Wang, Y Gao, C Lu… - Journal of Hazardous …, 2023 - Elsevier
Wild PAH-contaminated sites struggle to provide continuous and stable monitoring, resulting
in the potential risks of contaminated soil utilization could not be evaluated effectively. This …