[HTML][HTML] High variability of genomic instability and gene expression profiling in different HeLa clones

A Frattini, M Fabbri, R Valli, E De Paoli… - Scientific reports, 2015 - nature.com
The HeLa cell line is one of the most popular cell lines in biomedical research, despite its
well-known chromosomal instability. We compared the genomic and transcriptomic profiles …

qDRIP: a method to quantitatively assess RNA–DNA hybrid formation genome-wide

MP Crossley, MJ Bocek, S Hamperl… - Nucleic acids …, 2020 - academic.oup.com
R-loops are dynamic, co-transcriptional nucleic acid structures that facilitate physiological
processes but can also cause DNA damage in certain contexts. Perturbations of …

H3K36me3-mediated mismatch repair preferentially protects actively transcribed genes from mutation

Y Huang, L Gu, GM Li - Journal of Biological Chemistry, 2018 - ASBMB
Histone H3 trimethylation at lysine 36 (H3K36me3) is an important histone mark involved in
both transcription elongation and DNA mismatch repair (MMR). It is known that H3K36me3 …

PRC 1‐labeled microtubule bundles and kinetochore pairs show one‐to‐one association in metaphase

B Polak, P Risteski, S Lesjak, IM Tolić - EMBO reports, 2017 - embopress.org
In the mitotic spindle, kinetochore microtubules form k‐fibers, whereas overlap or interpolar
microtubules form antiparallel arrays containing the cross‐linker protein regulator of …

Guidelines for optimized gene knockout using CRISPR/Cas9

CV Campenhout, P Cabochette, AC Veillard… - …, 2019 - Taylor & Francis
CRISPR/Cas9 technology has evolved as the most powerful approach to generate genetic
models both for fundamental and preclinical research. Despite its apparent simplicity, the …

Engineering and evaluating drug delivery particles in microfluidic devices

M Björnmalm, Y Yan, F Caruso - Journal of Controlled Release, 2014 - Elsevier
The development of new and improved particle-based drug delivery is underpinned by an
enhanced ability to engineer particles with high fidelity and integrity, as well as increased …

Systematic review: characteristics and preclinical uses of bladder cancer cell lines

T Zuiverloon, FC De Jong, JC Costello… - Bladder …, 2018 - content.iospress.com
Background: Bladder cancer (BC) cell lines are indispensable in basic and preclinical
research. Currently, an up-to-date and comprehensive overview of available BC cell lines is …

The Mayo Clinic Florida microdosimetric kinetic model of clonogenic survival: formalism and first benchmark against in vitro and in silico data

A Parisi, CJ Beltran, KM Furutani - Physics in Medicine & Biology, 2022 - iopscience.iop.org
Objective. To develop a new model (Mayo Clinic Florida microdosimetric kinetic model, MCF
MKM) capable of accurately describing the in vitro clonogenic survival at low and high linear …

DNA replication acts as an error correction mechanism to maintain centromere identity by restricting CENP-A to centromeres

Y Nechemia-Arbely, KH Miga, O Shoshani… - Nature cell …, 2019 - nature.com
Chromatin assembled with the histone H3 variant CENP-A is the heritable epigenetic
determinant of human centromere identity. Using genome-wide mapping and reference …

Peroxin-dependent targeting of a lipid-droplet-destined membrane protein to ER subdomains

B Schrul, RR Kopito - Nature cell biology, 2016 - nature.com
Lipid droplets (LDs) are endoplasmic reticulum (ER)-derived lipid storage organelles
uniquely encapsulated by phospholipid monolayers. LD membrane proteins are embedded …