Translation affects mRNA stability in a codon-dependent manner in human cells

Q Wu, SG Medina, G Kushawah, ML DeVore… - elife, 2019 - elifesciences.org
mRNA translation decodes nucleotide into amino acid sequences. However, translation has
also been shown to affect mRNA stability depending on codon composition in model …

Transfer RNA demethylase ALKBH3 promotes cancer progression via induction of tRNA-derived small RNAs

Z Chen, M Qi, B Shen, G Luo, Y Wu, J Li… - Nucleic acids …, 2019 - academic.oup.com
Transfer RNA is heavily modified and plays a central role in protein synthesis and cellular
functions. Here we demonstrate that ALKBH3 is a 1-methyladenosine (m1A) and 3 …

Efficient and quantitative high-throughput tRNA sequencing

G Zheng, Y Qin, WC Clark, Q Dai, C Yi, C He… - Nature …, 2015 - nature.com
Despite its biological importance, tRNA has not been adequately sequenced by standard
methods because of its abundant post-transcriptional modifications and stable structure …

tRNA-derived small RNA: a novel regulatory small non-coding RNA

S Li, Z Xu, J Sheng - Genes, 2018 - mdpi.com
Deep analysis of next-generation sequencing data unveils numerous small non-coding
RNAs with distinct functions. Recently, fragments derived from tRNA, named as tRNA …

Translation and mRNA stability control

Q Wu, AA Bazzini - Annual review of biochemistry, 2023 - annualreviews.org
Messenger RNA (mRNA) stability and translational efficiency are two crucial aspects of the
post-transcriptional process that profoundly impact protein production in a cell. While it is …

Structures and mechanisms of tRNA methylation by METTL1–WDR4

VM Ruiz-Arroyo, R Raj, K Babu, O Onolbaatar… - Nature, 2023 - nature.com
Specific, regulated modification of RNAs is important for proper gene expression,. tRNAs are
rich with various chemical modifications that affect their stability and function,. 7 …

[PDF][PDF] Codon optimality-mediated mRNA degradation: Linking translational elongation to mRNA stability

H Bae, J Coller - Molecular cell, 2022 - cell.com
Messenger RNA (mRNA) translation by the ribosome represents the final step of a
complicated molecular dance from DNA to protein. Although classically considered a …

[PDF][PDF] tRNA modification dynamics from individual organisms to metaepitranscriptomics of microbiomes

W Zhang, M Foo, AM Eren, T Pan - Molecular cell, 2022 - cell.com
Summary tRNA is the most extensively modified RNA in cells. On average, a bacterial tRNA
contains 8 modifications per molecule and a eukaryotic tRNA contains 13 modifications per …

RNA N6-methyladenosine methylation in post-transcriptional gene expression regulation

Y Yue, J Liu, C He - Genes & development, 2015 - genesdev.cshlp.org
N 6-methyladenosine (m6A) is the most prevalent and internal modification that occurs in the
messenger RNAs (mRNA) of most eukaryotes, although its functional relevance remained a …

Deciphering the tRNA-derived small RNAs: origin, development, and future

B Liu, J Cao, X Wang, C Guo, Y Liu, T Wang - Cell Death & Disease, 2021 - nature.com
Transfer RNA (tRNA)-derived small RNAs (tsRNAs), a novel category of small noncoding
RNAs, are enzymatically cleaved from tRNAs. Previous reports have shed some light on the …