Artificial intelligence in drug design: algorithms, applications, challenges and ethics
AA Arabi - Future Drug Discovery, 2021 - Taylor & Francis
The discovery paradigm of drugs is rapidly growing due to advances in machine learning
(ML) and artificial intelligence (AI). This review covers myriad faces of AI and ML in drug …
(ML) and artificial intelligence (AI). This review covers myriad faces of AI and ML in drug …
AIONER: all-in-one scheme-based biomedical named entity recognition using deep learning
Motivation Biomedical named entity recognition (BioNER) seeks to automatically recognize
biomedical entities in natural language text, serving as a necessary foundation for …
biomedical entities in natural language text, serving as a necessary foundation for …
[HTML][HTML] Medjex: A medical jargon extraction model with wiki's hyperlink span and contextualized masked language model score
This paper proposes a new natural language processing (NLP) application for identifying
medical jargon terms potentially difficult for patients to comprehend from electronic health …
medical jargon terms potentially difficult for patients to comprehend from electronic health …
[HTML][HTML] The new version of the ANDDigest tool with improved AI-based short names recognition
TV Ivanisenko, PS Demenkov, NA Kolchanov… - International Journal of …, 2022 - mdpi.com
The body of scientific literature continues to grow annually. Over 1.5 million abstracts of
biomedical publications were added to the PubMed database in 2021. Therefore …
biomedical publications were added to the PubMed database in 2021. Therefore …
Single model for organic and inorganic chemical named entity recognition in ChemDataExtractor
T Isazawa, JM Cole - Journal of chemical information and …, 2022 - ACS Publications
Chemical Named Entity Recognition (NER) forms the basis of information extraction tasks in
the chemical domain. However, while such tasks can involve multiple domains of chemistry …
the chemical domain. However, while such tasks can involve multiple domains of chemistry …
Biomedical named-entity recognition by hierarchically fusing biobert representations and deep contextual-level word-embedding
Text mining in the biomedical domain is increasingly important as the volume of biomedical
documents increases. Thanks to advances in natural language processing (NLP), extracting …
documents increases. Thanks to advances in natural language processing (NLP), extracting …
Weakly supervised named entity tagging with learnable logical rules
We study the problem of building entity tagging systems by using a few rules as weak
supervision. Previous methods mostly focus on disambiguation entity types based on …
supervision. Previous methods mostly focus on disambiguation entity types based on …
Inexpensive domain adaptation of pretrained language models: Case studies on biomedical NER and covid-19 QA
N Poerner, U Waltinger, H Schütze - arXiv preprint arXiv:2004.03354, 2020 - arxiv.org
Domain adaptation of Pretrained Language Models (PTLMs) is typically achieved by
unsupervised pretraining on target-domain text. While successful, this approach is …
unsupervised pretraining on target-domain text. While successful, this approach is …
[HTML][HTML] Chemu 2020: Natural language processing methods are effective for information extraction from chemical patents
Chemical patents represent a valuable source of information about new chemical
compounds, which is critical to the drug discovery process. Automated information extraction …
compounds, which is critical to the drug discovery process. Automated information extraction …
[HTML][HTML] Localizing in-domain adaptation of transformer-based biomedical language models
TM Buonocore, C Crema, A Redolfi, R Bellazzi… - Journal of Biomedical …, 2023 - Elsevier
In the era of digital healthcare, the huge volumes of textual information generated every day
in hospitals constitute an essential but underused asset that could be exploited with task …
in hospitals constitute an essential but underused asset that could be exploited with task …