[HTML][HTML] LSTMVoter: chemical named entity recognition using a conglomerate of sequence labeling tools
Background Chemical and biomedical named entity recognition (NER) is an essential
preprocessing task in natural language processing. The identification and extraction of …
preprocessing task in natural language processing. The identification and extraction of …
[HTML][HTML] LeadMine: a grammar and dictionary driven approach to entity recognition
Background Chemical entity recognition has traditionally been performed by machine
learning approaches. Here we describe an approach using grammars and dictionaries. This …
learning approaches. Here we describe an approach using grammars and dictionaries. This …
OSPAR: A Corpus for Extraction of Organic Synthesis Procedures with Argument Roles
K Machi, S Akiyama, Y Nagata… - Journal of Chemical …, 2023 - ACS Publications
There is a pressing need for the automated extraction of chemical reaction information
because of the rapid growth of scientific documents. The previously reported works in the …
because of the rapid growth of scientific documents. The previously reported works in the …
Overview of DrugProt task at BioCreative VII: data and methods for large-scale text mining and knowledge graph generation of heterogenous chemical–protein …
It is getting increasingly challenging to efficiently exploit drug-related information described
in the growing amount of scientific literature. Indeed, for drug–gene/protein interactions, the …
in the growing amount of scientific literature. Indeed, for drug–gene/protein interactions, the …
[HTML][HTML] Dataset search in biodiversity research: Do metadata in data repositories reflect scholarly information needs?
The increasing amount of publicly available research data provides the opportunity to link
and integrate data in order to create and prove novel hypotheses, to repeat experiments or …
and integrate data in order to create and prove novel hypotheses, to repeat experiments or …
[HTML][HTML] MER: a shell script and annotation server for minimal named entity recognition and linking
FM Couto, A Lamurias - Journal of cheminformatics, 2018 - Springer
Named-entity recognition aims at identifying the fragments of text that mention entities of
interest, that afterwards could be linked to a knowledge base where those entities are …
interest, that afterwards could be linked to a knowledge base where those entities are …
The impact of domain-specific pre-training on named entity recognition tasks in materials science
N Walker, A Trewartha, H Huo, S Lee… - Available at SSRN …, 2021 - papers.ssrn.com
The massive increase in materials science publications has resulted in a bottleneck in
efficiently connecting new materials discoveries to knowledge from established literature …
efficiently connecting new materials discoveries to knowledge from established literature …
FDAPT: Federated domain-adaptive pre-training for language models
Combining Domain-adaptive Pre-training (DAPT) with Federated Learning (FL) can
enhance model adaptation by leveraging more sensitive and distributed data while …
enhance model adaptation by leveraging more sensitive and distributed data while …
[HTML][HTML] The RareDis corpus: a corpus annotated with rare diseases, their signs and symptoms
C Martínez-deMiguel, I Segura-Bedmar… - Journal of Biomedical …, 2022 - Elsevier
Rare diseases affect a small number of people compared to the general population.
However, more than 6,000 different rare diseases exist and, in total, they affect more than …
However, more than 6,000 different rare diseases exist and, in total, they affect more than …
[HTML][HTML] Lessons learned to enable question answering on knowledge graphs extracted from scientific publications: A case study on the coronavirus literature
C Badenes-Olmedo, O Corcho - Journal of Biomedical Informatics, 2023 - Elsevier
The article presents a workflow to create a question-answering system whose knowledge
base combines knowledge graphs and scientific publications on coronaviruses. It is based …
base combines knowledge graphs and scientific publications on coronaviruses. It is based …