Gliner: Generalist model for named entity recognition using bidirectional transformer

U Zaratiana, N Tomeh, P Holat, T Charnois - arXiv preprint arXiv …, 2023 - arxiv.org
Named Entity Recognition (NER) is essential in various Natural Language Processing (NLP)
applications. Traditional NER models are effective but limited to a set of predefined entity …

[PDF][PDF] Overview of the CHEMDNER patents task

M Krallinger, O Rabal… - … of the fifth …, 2015 - biocreative.bioinformatics.udel.edu
A considerable effort has been made to extract biological and chemical entities, as well as
their relationships, from the scientific literature, either manually through traditional literature …

[PDF][PDF] Text Mining for Bioinformatics Using Biomedical Literature.

A Lamurias, FM Couto - 2019 - core.ac.uk
Biomedical literature has become a rich source of information for various applications.
Automatic text mining methods can make the processing of extracting information from a …

Data augmentation via context similarity: An application to biomedical Named Entity Recognition

I Bartolini, V Moscato, M Postiglione, G Sperlì… - Information Systems, 2023 - Elsevier
In this paper, we present COntext SImilarity-based data augmentation for NER (COSINER),
a new method for improving Named Entity Recognition (NER) tasks using data …

[HTML][HTML] Title2Vec: A contextual job title embedding for occupational named entity recognition and other applications

J Liu, YC Ng, Z Gui, T Singhal, LTM Blessing… - Journal of Big Data, 2022 - Springer
Occupational data mining and analysis is an important task in understanding today's
industry and job market. Various machine learning techniques are proposed and gradually …

Rethinking Negative Instances for Generative Named Entity Recognition

Y Ding, J Li, P Wang, Z Tang, B Yan… - arXiv preprint arXiv …, 2024 - arxiv.org
Large Language Models (LLMs) have demonstrated impressive capabilities for generalizing
in unseen tasks. In the Named Entity Recognition (NER) task, recent advancements have …

[HTML][HTML] Semantic annotation of consumer health questions

H Kilicoglu, A Ben Abacha, Y Mrabet, SE Shooshan… - BMC …, 2018 - Springer
Background Consumers increasingly use online resources for their health information
needs. While current search engines can address these needs to some extent, they …

[HTML][HTML] Incorporating domain knowledge in chemical and biomedical named entity recognition with word representations

T Munkhdalai, M Li, K Batsuren, HA Park… - Journal of …, 2015 - Springer
Abstract Background Chemical and biomedical Named Entity Recognition (NER) is an
essential prerequisite task before effective text mining can begin for biochemical-text data …

Relation Extraction in underexplored biomedical domains: A diversity-optimised sampling and synthetic data generation approach

M Delmas, M Wysocka, A Freitas - Computational Linguistics, 2024 - direct.mit.edu
The sparsity of labelled data is an obstacle to the development of Relation Extraction (RE)
models and the completion of databases in various biomedical areas. While being of high …

[HTML][HTML] NLM-Gene, a richly annotated gold standard dataset for gene entities that addresses ambiguity and multi-species gene recognition

R Islamaj, CH Wei, D Cissel, N Miliaras… - Journal of biomedical …, 2021 - Elsevier
The automatic recognition of gene names and their corresponding database identifiers in
biomedical text is an important first step for many downstream text-mining applications …