When integration fails: Prokaryote phylogeny and the tree of life
MA O'Malley - Studies in History and Philosophy of Science Part C …, 2013 - Elsevier
Much is being written these days about integration, its desirability and even its necessity
when complex research problems are to be addressed. Seldom, however, do we hear much …
when complex research problems are to be addressed. Seldom, however, do we hear much …
Genetic exchange across a species boundary in the archaeal genus Ferroplasma
Speciation as the result of barriers to genetic exchange is the foundation for the general
biological species concept. However, the relevance of genetic exchange for defining …
biological species concept. However, the relevance of genetic exchange for defining …
Introgression in the genus Campylobacter: generation and spread of mosaic alleles
Horizontal genetic exchange strongly influences the evolution of many bacteria,
substantially contributing to difficulties in defining their position in taxonomic groups. In …
substantially contributing to difficulties in defining their position in taxonomic groups. In …
The Inadequacy of Morphology for Species and Genus Delineation in Microbial Eukaryotes: An Example from the Parabasalian Termite Symbiont Coronympha
Background For the majority of microbial eukaryotes (protists, algae), there is no clearly
superior species concept that is consistently applied. In the absence of a practical biological …
superior species concept that is consistently applied. In the absence of a practical biological …
The modern synthesis in the light of microbial genomics
A Booth, C Mariscal, WF Doolittle - Annual review of …, 2016 - annualreviews.org
We review the theoretical implications of findings in genomics for evolutionary biology since
the Modern Synthesis. We examine the ways in which microbial genomics has influenced …
the Modern Synthesis. We examine the ways in which microbial genomics has influenced …
Duplication is more common among laterally transferred genes than among indigenous genes
SD Hooper, OG Berg - Genome biology, 2003 - Springer
Background Recent developments in the understanding of paralogous evolution have
prompted a focus not only on obviously advantageous genes, but also on genes that can be …
prompted a focus not only on obviously advantageous genes, but also on genes that can be …
Comparative Genomic Analysis of the Genus Nocardiopsis Provides New Insights into Its Genetic Mechanisms of Environmental Adaptability
HW Li, XY Zhi, JC Yao, Y Zhou, SK Tang, HP Klenk… - PLoS …, 2013 - journals.plos.org
The genus Nocardiopsis, a widespread group in phylum Actinobacteria, has received much
attention owing to its ecological versatility, pathogenicity, and ability to produce a rich array …
attention owing to its ecological versatility, pathogenicity, and ability to produce a rich array …
Betaproteobacteria are predominant in drinking water: are there reasons for concern?
Betaproteobacteria include some of the most abundant and ubiquitous bacterial genera that
can be found in drinking water, including mineral water. The combination of physiology and …
can be found in drinking water, including mineral water. The combination of physiology and …
Introduction to genome biology and diversity
Organisms display astonishing levels of cell and molecular diversity, including genome size,
shape, and architecture. In this chapter, we review how the genome can be viewed as both a …
shape, and architecture. In this chapter, we review how the genome can be viewed as both a …
Deduction of probable events of lateral gene transfer through comparison of phylogenetic trees by recursive consolidation and rearrangement
D MacLeod, RL Charlebois, F Doolittle… - BMC evolutionary …, 2005 - Springer
Background When organismal phylogenies based on sequences of single marker genes are
poorly resolved, a logical approach is to add more markers, on the assumption that weak but …
poorly resolved, a logical approach is to add more markers, on the assumption that weak but …