Size does matter! Label-free detection of small molecule–protein interaction

P Fechner, O Bleher, M Ewald… - Analytical and …, 2014 - Springer
This review is focused on methods for detecting small molecules and, in particular, the
characterisation of their interaction with natural proteins (eg receptors, ion channels) …

Chemical proteomic profiling reveals protein interactors of the alarmones diadenosine triphosphate and tetraphosphate

L Krüger, CJ Albrecht, HK Schammann… - Nature …, 2021 - nature.com
The nucleotides diadenosine triphosphate (Ap3A) and diadenosine tetraphosphate (Ap4A)
are formed in prokaryotic and eukaryotic cells. Since their concentrations increase …

Phosphate-modified nucleotides for monitoring enzyme activity

S Ermert, A Marx, SM Hacker - … Labeling and Sensing in Chemical Biology, 2017 - Springer
Nucleotides modified at the terminal phosphate position have been proven to be interesting
entities to study the activity of a variety of different protein classes. In this chapter, we present …

Bioorthogonally Functionalized NAD+ Analogues for In‐Cell Visualization of Poly(ADP‐Ribose) Formation

S Wallrodt, A Buntz, Y Wang… - Angewandte Chemie …, 2016 - Wiley Online Library
Abstract Poly (ADP‐ribos) ylation (PARylation) is a major posttranslational modification and
signaling event in most eukaryotes. Fundamental processes like DNA repair and …

Synthesis and fluorescence characteristics of ATP-based FRET probes

N Hardt, SM Hacker, A Marx - Organic & biomolecular chemistry, 2013 - pubs.rsc.org
Adenosine triphosphate (ATP) analogues labelled with two dyes suitable for undergoing
Förster Resonance Energy Transfer (FRET) have the potential to be valuable tools to …

Phosphate esters and anhydrides–recent strategies targeting nature's favoured modifications

HJ Jessen, N Ahmed, A Hofer - Organic & biomolecular chemistry, 2014 - pubs.rsc.org
Esters and anhydrides of phosphoric acid are essential in biology. It is very difficult to identify
processes in life that do not involve these modifications and their transformation at some …

Fluorogenic ATP analogues for online monitoring of ATP consumption: observing ubiquitin activation in real time

SM Hacker, D Pagliarini, T Tischer, N Hardt… - 2013 - kops.uni-konstanz.de
Many enzymes use ATP in signal-transducing processes or as an energy source. New
fluorogenic ATP analogues signal ATP consumption by ubiquitin-like protein-activating …

Selective monitoring of the enzymatic activity of the tumor suppressor Fhit

SM Hacker, F Mortensen, M Scheffner… - Angewandte Chemie …, 2014 - Wiley Online Library
Cancer is a leading cause of death worldwide. Functional inactivation of tumor suppressor
proteins, mainly by mutations in the corresponding genes, is a key event in cancer …

A fluorescent HTS assay for phosphohydrolases based on nucleoside 5′-fluorophosphates: its application in screening for inhibitors of mRNA decapping scavenger …

MR Baranowski, A Nowicka, J Jemielity… - Organic & Biomolecular …, 2016 - pubs.rsc.org
Several nucleotide-specific phosphohydrolases can cleave P–F bonds in substrate
analogues containing a fluorophosphate moiety to release fluoride ions. In this work, by …

Fluorescence‐Lifetime‐Sensitive Probes for Monitoring ATP Cleavage

D Hammler, A Marx, A Zumbusch - Chemistry–A European …, 2018 - Wiley Online Library
Adenosine triphosphate (ATP) probes modified with fluorescence dyes that change their
fluorescence properties upon cleavage are an interesting tool for monitoring enzymatic ATP …