The peptide woods are lovely, dark and deep: Hunting for novel cancer antigens

D Oreper, S Klaeger, S Jhunjhunwala… - Seminars in …, 2023 - Elsevier
Harnessing the patient's immune system to control a tumor is a proven avenue for cancer
therapy. T cell therapies as well as therapeutic vaccines, which target specific antigens of …

Emerging roles of alternative cleavage and polyadenylation (APA) in human disease

P Dharmalingam, R Mahalingam… - Journal of Cellular …, 2022 - Wiley Online Library
In the messenger RNA (mRNA) maturation process, the 3′‐end of pre‐mRNA is cleaved
and a poly (A) sequence is added, this is an important determinant of mRNA stability and its …

Alternative polyadenylation alters protein dosage by switching between intronic and 3′ UTR sites

N de Prisco, C Ford, ND Elrod, W Lee, LC Tang… - Science …, 2023 - science.org
Alternative polyadenylation (APA) creates distinct transcripts from the same gene by
cleaving the pre-mRNA at poly (A) sites that can lie within the 3′ untranslated region (3 …

[HTML][HTML] Selective poly adenylation predicts the efficacy of immunotherapy in patients with lung adenocarcinoma by multiple omics research

L Wu, Y Zhong, X Yu, D Wu, P Xu, L Lv, X Ruan… - Anti-Cancer …, 2022 - journals.lww.com
The aim of this study was to find the application value of selective polyadenylation in
immune cell infiltration, biological transcription function and risk assessment of survival and …

[HTML][HTML] Exploration of prognosis and immunometabolism landscapes in ER+ breast cancer based on a novel lipid metabolism-related signature

L Shen, H Huang, J Li, W Chen, Y Yao, J Hu… - Frontiers in …, 2023 - frontiersin.org
Introduction Lipid metabolic reprogramming is gaining attention as a hallmark of cancers.
Recent mounting evidence indicates that the malignant behavior of breast cancer (BC) is …

NUDT21 alters glioma migration through differential alternative polyadenylation of LAMC1

VS Jonnakuti, P Ji, Y Gao, A Lin, Y Chu, N Elrod… - Journal of Neuro …, 2023 - Springer
Purpose Gliomas and their surrounding microenvironment constantly interact to promote
tumorigenicity, yet the underlying posttranscriptional regulatory mechanisms that govern this …

[HTML][HTML] CSTF3 contributes to platinum resistance in ovarian cancer through alternative polyadenylation of lncRNA NEAT1 and generating the short isoform NEAT1_1

X Luo, Q Wei, X Jiang, N Chen, X Zuo, H Zhao… - Cell Death & …, 2024 - nature.com
Platinum-based chemotherapy is the standard postoperative adjuvant treatment for ovarian
cancer (OC). Despite the initial response to chemotherapy, 85% of advanced OC patients …

[HTML][HTML] Alternative splicing and alternative polyadenylation define tumor immune microenvironment and pharmacogenomic landscape in clear cell renal carcinoma

W Zhong, Y Wu, M Zhu, H Zhong, C Huang… - … Therapy-Nucleic Acids, 2022 - cell.com
Two major posttranscriptional mechanisms—alternative splicing (AS) and alternative
polyadenylation (APA)—have attracted much attention in cancer research. Nevertheless …

[HTML][HTML] PolyAMiner-Bulk is a deep learning-based algorithm that decodes alternative polyadenylation dynamics from bulk RNA-seq data

VS Jonnakuti, EJ Wagner, M Maletić-Savatić, Z Liu… - Cell Reports …, 2024 - cell.com
Alternative polyadenylation (APA) is a key post-transcriptional regulatory mechanism; yet, its
regulation and impact on human diseases remain understudied. Existing bulk RNA …

[HTML][HTML] RBM22 regulates RNA polymerase II 5′ pausing, elongation rate, and termination by coordinating 7SK-P-TEFb complex and SPT5

X Du, W Qin, C Yang, L Dai, M San, Y Xia, S Zhou… - Genome Biology, 2024 - Springer
Background Splicing factors are vital for the regulation of RNA splicing, but some have also
been implicated in regulating transcription. The underlying molecular mechanisms of their …