Doubling down on genomes: polyploidy and crop plants

S Renny‐Byfield, JF Wendel - American journal of botany, 2014 - Wiley Online Library
Polyploidy, or whole genome multiplication, is ubiquitous among angiosperms. Many crop
species are relatively recent allopolyploids, resulting from interspecific hybridization and …

Interpretation of karyotype evolution should consider chromosome structural constraints

I Schubert, MA Lysak - Trends in Genetics, 2011 - cell.com
Comparative genetics, genomics and cytogenetics provide tools to trace the evolutionary
history of extant genomes. Yet, the interpretation of rapidly increasing genomic data is not …

MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity

Y Wang, H Tang, JD DeBarry, X Tan, J Li… - Nucleic acids …, 2012 - academic.oup.com
MCScan is an algorithm able to scan multiple genomes or subgenomes in order to identify
putative homologous chromosomal regions, and align these regions using genes as …

[HTML][HTML] The draft genome of sweet orange (Citrus sinensis)

Q Xu, LL Chen, X Ruan, D Chen, A Zhu, C Chen… - Nature …, 2013 - nature.com
Oranges are an important nutritional source for human health and have immense economic
value. Here we present a comprehensive analysis of the draft genome of sweet orange …

[HTML][HTML] The draft genome of watermelon (Citrullus lanatus) and resequencing of 20 diverse accessions

S Guo, J Zhang, H Sun, J Salse, WJ Lucas, H Zhang… - Nature …, 2013 - nature.com
Watermelon, Citrullus lanatus, is an important cucurbit crop grown throughout the world.
Here we report a high-quality draft genome sequence of the east Asia watermelon cultivar …

Transposable elements, epigenetics, and genome evolution

NV Fedoroff - Science, 2012 - science.org
2012 still-prevalent view that every bit of an organism's DNA has a specific function crafted
by selection. Thus, both papers promoted Dawkins' concept of “selfish DNA”—the notion that …

[HTML][HTML] The genome of Theobroma cacao

X Argout, J Salse, JM Aury, MJ Guiltinan, G Droc… - Nature …, 2011 - nature.com
We sequenced and assembled the draft genome of Theobroma cacao, an economically
important tropical-fruit tree crop that is the source of chocolate. This assembly corresponds …

[图书][B] Fossil fungi

TN Taylor, M Krings, EL Taylor - 2014 - books.google.com
Fungi are ubiquitous in the world and responsible for driving the evolution and governing
the sustainability of ecosystems now and in the past. Fossil Fungi is the first encyclopedic …

[HTML][HTML] Genome sequence of the date palm Phoenix dactylifera L

IS Al-Mssallem, S Hu, X Zhang, Q Lin, W Liu… - Nature …, 2013 - nature.com
Date palm (Phoenix dactylifera L.) is a cultivated woody plant species with agricultural and
economic importance. Here we report a genome assembly for an elite variety (Khalas) …

Unlocking the barley genome by chromosomal and comparative genomics

KFX Mayer, M Martis, PE Hedley, H Šimková… - The Plant …, 2011 - academic.oup.com
We used a novel approach that incorporated chromosome sorting, next-generation
sequencing, array hybridization, and systematic exploitation of conserved synteny with …