[HTML][HTML] Industrial biotechnology of Pseudomonas putida: advances and prospects

A Weimer, M Kohlstedt, DC Volke, PI Nikel… - Applied Microbiology …, 2020 - Springer
Pseudomonas putida is a Gram-negative, rod-shaped bacterium that can be encountered in
diverse ecological habitats. This ubiquity is traced to its remarkably versatile metabolism …

[HTML][HTML] Microbial biodiversity and bioremediation assessment through omics approaches

H Chandran, M Meena, K Sharma - Frontiers in Environmental …, 2020 - frontiersin.org
Industrialization, population burst, and changing lifestyles have resulted in the genesis of
non-degradable pollutants languishing the environment and human health. Biological …

Reconfiguration of metabolic fluxes in Pseudomonas putida as a response to sub-lethal oxidative stress

PI Nikel, T Fuhrer, M Chavarría… - The ISME …, 2021 - academic.oup.com
As a frequent inhabitant of sites polluted with toxic chemicals, the soil bacterium and plant-
root colonizer Pseudomonas putida can tolerate high levels of endogenous and exogenous …

[HTML][HTML] Complex regulation in a Comamonas platform for diverse aromatic carbon metabolism

RA Wilkes, J Waldbauer, A Carroll… - Nature Chemical …, 2023 - nature.com
Critical to a sustainable energy future are microbial platforms that can process aromatic
carbons from the largely untapped reservoir of lignin and plastic feedstocks. Comamonas …

[HTML][HTML] Biobased PET from lignin using an engineered cis, cis-muconate-producing Pseudomonas putida strain with superior robustness, energy and redox …

M Kohlstedt, A Weimer, F Weiland, J Stolzenberger… - Metabolic …, 2022 - Elsevier
Polyethylene terephthalate (PET), the most common synthetic polyester today, is largely
produced from fossil resources, contributing to global warming. Consequently, sustainable …

[HTML][HTML] PeakDecoder enables machine learning-based metabolite annotation and accurate profiling in multidimensional mass spectrometry measurements

A Bilbao, N Munoz, J Kim, DJ Orton, Y Gao… - Nature …, 2023 - nature.com
Multidimensional measurements using state-of-the-art separations and mass spectrometry
provide advantages in untargeted metabolomics analyses for studying biological and …

[HTML][HTML] Maximizing microbial bioproduction from sustainable carbon sources using iterative systems engineering

T Eng, D Banerjee, J Menasalvas, Y Chen, J Gin… - Cell Reports, 2023 - cell.com
Maximizing the production of heterologous biomolecules is a complex problem that can be
addressed with a systems-level understanding of cellular metabolism and regulation …

Fatty acid and alcohol metabolism in Pseudomonas putida: functional analysis using random barcode transposon sequencing

MG Thompson, MR Incha, AN Pearson… - Applied and …, 2020 - Am Soc Microbiol
With its ability to catabolize a wide variety of carbon sources and a growing engineering
toolkit, Pseudomonas putida KT2440 is emerging as an important chassis organism for …

Microbial hosts for metabolic engineering of lignin bioconversion to renewable chemicals

TDH Bugg, JJ Williamson, F Alberti - Renewable and Sustainable Energy …, 2021 - Elsevier
This review discusses the use of engineered microbes for bioconversion of lignin from plant
biomass to produce renewable chemicals. Existing bacterial hosts for lignin bioconversion …

Contextual flexibility in Pseudomonas aeruginosa central carbon metabolism during growth in single carbon sources

SK Dolan, M Kohlstedt, S Trigg, P Vallejo Ramirez… - MBio, 2020 - Am Soc Microbiol
Pseudomonas aeruginosa is an opportunistic human pathogen, particularly noted for
causing infections in the lungs of people with cystic fibrosis (CF). Previous studies have …