A systems approach to clinical oncology uses deep phenotyping to deliver personalized care

JT Yurkovich, Q Tian, ND Price, L Hood - Nature Reviews Clinical …, 2020 - nature.com
Cancer encompasses a complex, heterogeneous and dynamic group of diseases that arise
from perturbations to multiple biological networks within the body. A systems biology-based …

Immune regulation of the cGAS-STING signaling pathway in the tumor microenvironment and its clinical application

F Pu, F Chen, J Liu, Z Zhang, Z Shao - OncoTargets and therapy, 2021 - Taylor & Francis
As a DNA receptor in the cytoplasm, cyclic GMP-AMP synthase (cGAS) contributes to the
recognition of abnormal DNA in the cytoplasm and contributes to the stimulator of interferon …

Distinct prognostic value of circulating anti-telomerase CD4+ Th1 immunity and exhausted PD-1+/TIM-3+ T cells in lung cancer

C Laheurte, M Dosset, D Vernerey, L Boullerot… - British journal of …, 2019 - nature.com
Background Despite the critical roles of Th1-polarised CD4+ T cells in cancer
immunosurveillance, the translation of their potential to clinical use remains challenging …

Integration of omics data sources to inform mechanistic modeling of immune‐oncology therapies: a tutorial for clinical pharmacologists

G Lazarou, V Chelliah, BG Small… - Clinical …, 2020 - Wiley Online Library
Application of contemporary molecular biology techniques to clinical samples in oncology
resulted in the accumulation of unprecedented experimental data. These “omics” data are …

Impact of immunotherapy on CD4 T cell phenotypes and function in cancer

M Saillard, M Cenerenti, P Romero, C Jandus - Vaccines, 2021 - mdpi.com
Immunotherapy has become a standard treatment in many cancers and it is based on three
main therapeutic axes: immune checkpoint blockade (ICB), vaccination and adoptive cell …

Vaccination with Designed Neopeptides Induces Intratumoral, Cross-reactive CD4+ T-cell Responses in Glioblastoma

J Wang, T Weiss, MC Neidert, NC Toussaint… - Clinical Cancer …, 2022 - AACR
Purpose: The low mutational load of some cancers is considered one reason for the difficulty
to develop effective tumor vaccines. To overcome this problem, we developed a strategy to …

The ways of isolating neoantigen-specific T cells

Q Li, ZY Ding - Frontiers in Oncology, 2020 - frontiersin.org
Immunotherapy has revolutionized the standard of care for a range of malignancies.
Accumulating evidence suggests that the success of immunotherapy is likely attributable to …

Beyond sequencing: prioritizing and delivering neoantigens for cancer vaccines

AS Roesler, KS Anderson - … Design: Methods and Protocols, Volume 1 …, 2021 - Springer
Neoantigens are tumor-specific proteins and peptides that can be highly immunogenic.
Immune-mediated tumor rejection is strongly associated with cytotoxic responses to …

Exploration of the tumor mutational burden as a prognostic biomarker and related hub gene identification in prostate cancer

L Wang, Y Yao, C Xu, X Wang… - Technology in cancer …, 2021 - journals.sagepub.com
To explore the signature function of the tumor mutational burden (TMB) and potential
biomarkers in prostate cancer (PCa), transcriptome profiles, somatic mutation data, and …

HLA class II loss and JAK1/2 deficiency coevolve in melanoma leading to CD4 T-cell and IFNγ Cross-resistance

S Stupia, C Heeke, A Brüggemann, A Zaremba… - Clinical Cancer …, 2023 - AACR
Purpose: Recent studies have demonstrated HLA class II (HLA-II)–dependent killing of
melanoma cells by cytotoxic CD4 T cells. We investigated evolution of HLA-II–loss tumors …