Unified classification of mouse retinal ganglion cells using function, morphology, and gene expression

J Goetz, ZF Jessen, A Jacobi, A Mani, S Cooler… - Cell reports, 2022 - cell.com
Classification and characterization of neuronal types are critical for understanding their
function and dysfunction. Neuronal classification schemes typically rely on measurements of …

DSTG: deconvoluting spatial transcriptomics data through graph-based artificial intelligence

Q Song, J Su - Briefings in bioinformatics, 2021 - academic.oup.com
Recent development of spatial transcriptomics (ST) is capable of associating spatial
information at different spots in the tissue section with RNA abundance of cells within each …

[HTML][HTML] Outer radial glia-like cancer stem cells contribute to heterogeneity of glioblastoma

A Bhaduri, E Di Lullo, D Jung, S Müller, EE Crouch… - Cell stem cell, 2020 - cell.com
Glioblastoma is a devastating form of brain cancer. To identify aspects of tumor
heterogeneity that may illuminate drivers of tumor invasion, we created a glioblastoma tumor …

Development and arealization of the cerebral cortex

CR Cadwell, A Bhaduri, MA Mostajo-Radji, MG Keefe… - Neuron, 2019 - cell.com
Adult cortical areas consist of specialized cell types and circuits that support unique higher-
order cognitive functions. How this regional diversity develops from an initially uniform …

A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex

Z Yao, H Liu, F Xie, S Fischer, RS Adkins, AI Aldridge… - Nature, 2021 - nature.com
Single-cell transcriptomics can provide quantitative molecular signatures for large, unbiased
samples of the diverse cell types in the brain,–. With the proliferation of multi-omics datasets …

Cerebellar nuclei evolved by repeatedly duplicating a conserved cell-type set

JM Kebschull, EB Richman, N Ringach, D Friedmann… - Science, 2020 - science.org
INTRODUCTION The brains of extant animals have evolved over hundreds of millions of
years from simple circuits. Cell types diversified, connections elaborated, and new brain …

In vivo Perturb-Seq reveals neuronal and glial abnormalities associated with autism risk genes

X Jin, SK Simmons, A Guo, AS Shetty, M Ko, L Nguyen… - Science, 2020 - science.org
INTRODUCTION Human genetic studies have revealed long lists of genes and loci
associated with risk for many diseases and disorders, but to systematically evaluate their …

Transcriptomic taxonomy and neurogenic trajectories of adult human, macaque, and pig hippocampal and entorhinal cells

D Franjic, M Skarica, S Ma, JI Arellano… - Neuron, 2022 - cell.com
The hippocampal-entorhinal system supports cognitive functions, has lifelong neurogenic
capabilities in many species, and is selectively vulnerable to Alzheimer's disease. To …

Molecular atlas of the adult mouse brain

C Ortiz, JF Navarro, A Jurek, A Märtin, J Lundeberg… - Science …, 2020 - science.org
Brain maps are essential for integrating information and interpreting the structure-function
relationship of circuits and behavior. We aimed to generate a systematic classification of the …

Cell-type-specific aging clocks to quantify aging and rejuvenation in neurogenic regions of the brain

MT Buckley, ED Sun, BM George, L Liu, N Schaum… - Nature Aging, 2023 - nature.com
The diversity of cell types is a challenge for quantifying aging and its reversal. Here we
develop 'aging clocks' based on single-cell transcriptomics to characterize cell-type-specific …