Open-source machine learning in computational chemistry

A Hagg, KN Kirschner - Journal of Chemical Information and …, 2023 - ACS Publications
The field of computational chemistry has seen a significant increase in the integration of
machine learning concepts and algorithms. In this Perspective, we surveyed 179 open …

QupKake: Integrating Machine Learning and Quantum Chemistry for Micro-pKa Predictions

OD Abarbanel, GR Hutchison - Journal of Chemical Theory and …, 2024 - ACS Publications
Accurate prediction of micro-p K a values is crucial for understanding and modulating the
acidity and basicity of organic molecules, with applications in drug discovery, materials …

Molecular gas-phase conformational ensembles

S Das, KM Merz Jr - Journal of Chemical Information and …, 2024 - ACS Publications
Accurately determining the global minima of a molecular structure is important in diverse
scientific fields, including drug design, materials science, and chemical synthesis …

FragGrow: A Web Server for Structure-Based Drug Design by Fragment Growing within Constraints

Y Zhang, Z Zhang, D Ke, X Pan, X Wang… - Journal of Chemical …, 2024 - ACS Publications
Fragment growing is an important ligand design strategy in drug discovery. In this study, we
present FragGrow, a web server that facilitates structure-based drug design by fragment …

[HTML][HTML] X-ray Structure of Eleven New N,N′-Substituted Guanidines: Effect of Substituents on Tautomer Structure in the Solid State

V Elumalai, V Eigner, NA Janjua, PO Åstrand, T Visnes… - Crystals, 2024 - mdpi.com
Guanidine-containing molecules are an interesting class of compounds within both
medicinal and material sciences. Having knowledge of their tautomerism is key in designing …

ChemXTree: A Tree-enhanced Classification Approach to Small-molecule Drug Discovery

Y Xu, X Liu, J Ge, W Xia, CW Ju, H Zhang, JZH Zhang - bioRxiv, 2023 - biorxiv.org
The rapid advancement of machine learning, particularly deep learning, has propelled
significant strides in drug discovery, offering novel methodologies for molecular property …

Combining Quantum Mechanical Calculations with Machine Learning and Genetic Algorithms for the Design of Better Materials

OD Abarbanel - 2024 - d-scholarship.pitt.edu
In the past, the discovery process of new materials was done mainly through trial and error,
which was time-consuming and expensive. However, computational simulations and models …