Geometric deep learning on molecular representations
Geometric deep learning (GDL) is based on neural network architectures that incorporate
and process symmetry information. GDL bears promise for molecular modelling applications …
and process symmetry information. GDL bears promise for molecular modelling applications …
Concepts of artificial intelligence for computer-assisted drug discovery
X Yang, Y Wang, R Byrne, G Schneider… - Chemical …, 2019 - ACS Publications
Artificial intelligence (AI), and, in particular, deep learning as a subcategory of AI, provides
opportunities for the discovery and development of innovative drugs. Various machine …
opportunities for the discovery and development of innovative drugs. Various machine …
Geometric deep learning of RNA structure
RNA molecules adopt three-dimensional structures that are critical to their function and of
interest in drug discovery. Few RNA structures are known, however, and predicting them …
interest in drug discovery. Few RNA structures are known, however, and predicting them …
Equibind: Geometric deep learning for drug binding structure prediction
Predicting how a drug-like molecule binds to a specific protein target is a core problem in
drug discovery. An extremely fast computational binding method would enable key …
drug discovery. An extremely fast computational binding method would enable key …
Rapid identification of potential inhibitors of SARS‐CoV‐2 main protease by deep docking of 1.3 billion compounds
Abstract The recently emerged 2019 Novel Coronavirus (SARS‐CoV‐2) and associated
COVID‐19 disease cause serious or even fatal respiratory tract infection and yet no …
COVID‐19 disease cause serious or even fatal respiratory tract infection and yet no …
An open-source drug discovery platform enables ultra-large virtual screens
On average, an approved drug currently costs US $2–3 billion and takes more than 10 years
to develop. In part, this is due to expensive and time-consuming wet-laboratory experiments …
to develop. In part, this is due to expensive and time-consuming wet-laboratory experiments …
[PDF][PDF] Machine learning on graphs: A model and comprehensive taxonomy
There has been a surge of recent interest in graph representation learning (GRL). GRL
methods have generally fallen into three main categories, based on the availability of …
methods have generally fallen into three main categories, based on the availability of …
Utilizing graph machine learning within drug discovery and development
Graph machine learning (GML) is receiving growing interest within the pharmaceutical and
biotechnology industries for its ability to model biomolecular structures, the functional …
biotechnology industries for its ability to model biomolecular structures, the functional …
Transfer learning for drug discovery
C Cai, S Wang, Y Xu, W Zhang, K Tang… - Journal of Medicinal …, 2020 - ACS Publications
The data sets available to train models for in silico drug discovery efforts are often small.
Indeed, the sparse availability of labeled data is a major barrier to artificial-intelligence …
Indeed, the sparse availability of labeled data is a major barrier to artificial-intelligence …
[HTML][HTML] GNINA 1.0: molecular docking with deep learning
AT McNutt, P Francoeur… - Journal of …, 2021 - jcheminf.biomedcentral.com
Molecular docking computationally predicts the conformation of a small molecule when
binding to a receptor. Scoring functions are a vital piece of any molecular docking pipeline …
binding to a receptor. Scoring functions are a vital piece of any molecular docking pipeline …