Computational network biology: data, models, and applications
Biological entities are involved in intricate and complex interactions, in which uncovering the
biological information from the network concepts are of great significance. Benefiting from …
biological information from the network concepts are of great significance. Benefiting from …
The BioGRID interaction database: 2019 update
R Oughtred, C Stark, BJ Breitkreutz, J Rust… - Nucleic acids …, 2019 - academic.oup.com
Abstract The Biological General Repository for Interaction Datasets (BioGRID:
https://thebiogrid. org) is an open access database dedicated to the curation and archival …
https://thebiogrid. org) is an open access database dedicated to the curation and archival …
Evaluation and comparison of multi-omics data integration methods for cancer subtyping
Computational integrative analysis has become a significant approach in the data-driven
exploration of biological problems. Many integration methods for cancer subtyping have …
exploration of biological problems. Many integration methods for cancer subtyping have …
[HTML][HTML] Network diffusion promotes the integrative analysis of multiple omics
The development of integrative methods is one of the main challenges in bioinformatics.
Network-based methods for the analysis of multiple gene-centered datasets take into …
Network-based methods for the analysis of multiple gene-centered datasets take into …
Cancer subtype classification and modeling by pathway attention and propagation
Motivation Biological pathway is an important curated knowledge of biological processes.
Thus, cancer subtype classification based on pathways will be very useful to understand …
Thus, cancer subtype classification based on pathways will be very useful to understand …
[HTML][HTML] A network medicine approach for identifying diagnostic and prognostic biomarkers and exploring drug repurposing in human cancer
Cancer is a heterogeneous disease mainly driven by abnormal gene perturbations in
regulatory networks. Therefore, it is appealing to identify the common and specific perturbed …
regulatory networks. Therefore, it is appealing to identify the common and specific perturbed …
[HTML][HTML] Analysis of the microarray gene expression for breast cancer progression after the application modified logistic regression
F Morais-Rodrigues, R Silv́erio-Machado, RB Kato… - Gene, 2020 - Elsevier
Methods based around statistics and linear algebra have been increasingly used in attempts
to address emerging questions in microarray literature. Microarray technology is a long-used …
to address emerging questions in microarray literature. Microarray technology is a long-used …
MONTI: a multi-omics non-negative tensor decomposition framework for gene-level integrative analysis
Multi-omics data is frequently measured to enrich the comprehension of biological
mechanisms underlying certain phenotypes. However, due to the complex relations and …
mechanisms underlying certain phenotypes. However, due to the complex relations and …
[HTML][HTML] Classifying breast cancer molecular subtypes by using deep clustering approach
N Rohani, C Eslahchi - Frontiers in genetics, 2020 - frontiersin.org
Cancer is a complex disease with a high rate of mortality. The characteristics of tumor
masses are very heterogeneous; thus, the appropriate classification of tumors is a critical …
masses are very heterogeneous; thus, the appropriate classification of tumors is a critical …
[PDF][PDF] Integrated analysis of ovarian cancer patients from prospective transcription factor activity reveals subtypes of prognostic significance
D Su, Y Xiong, H Wei, S Wang, J Ke, P Liang, H Zhang… - Heliyon, 2023 - cell.com
Transcription factors are protein molecules that act as regulators of gene expression.
Aberrant protein activity of transcription factors can have a significant impact on tumor …
Aberrant protein activity of transcription factors can have a significant impact on tumor …