[HTML][HTML] Microfluidics for long-term single-cell time-lapse microscopy: Advances and applications
Cells are inherently dynamic, whether they are responding to environmental conditions or
simply at equilibrium, with biomolecules constantly being made and destroyed. Due to their …
simply at equilibrium, with biomolecules constantly being made and destroyed. Due to their …
Cellular resource allocation strategies for cell size and shape control in bacteria
Bacteria are highly adaptive microorganisms that thrive in a wide range of growth conditions
via changes in cell morphologies and macromolecular composition. How bacterial …
via changes in cell morphologies and macromolecular composition. How bacterial …
[HTML][HTML] Concentration fluctuations in growing and dividing cells: Insights into the emergence of concentration homeostasis
Intracellular reaction rates depend on concentrations and hence their levels are often
regulated. However classical models of stochastic gene expression lack a cell size …
regulated. However classical models of stochastic gene expression lack a cell size …
Using conditional independence tests to elucidate causal links in cell cycle regulation in Escherichia coli
P Kar, S Tiruvadi-Krishnan, J Männik… - Proceedings of the …, 2023 - National Acad Sciences
How cells regulate their cell cycles is a central question for cell biology. Models of cell size
homeostasis have been proposed for bacteria, archaea, yeast, plant, and mammalian cells …
homeostasis have been proposed for bacteria, archaea, yeast, plant, and mammalian cells …
Bacterial replication initiation as precision control by protein counting
Balanced biosynthesis is the hallmark of bacterial cell physiology, where the concentrations
of stable proteins remain steady. However, this poses a conceptual challenge to modeling …
of stable proteins remain steady. However, this poses a conceptual challenge to modeling …
[HTML][HTML] Robust replication initiation from coupled homeostatic mechanisms
M Berger, PR Wolde - Nature communications, 2022 - nature.com
The bacterium Escherichia coli initiates replication once per cell cycle at a precise volume
per origin and adds an on average constant volume between successive initiation events …
per origin and adds an on average constant volume between successive initiation events …
[HTML][HTML] Mechanisms of cell size regulation in slow-growing Escherichia coli cells: discriminating models beyond the adder
Under ideal conditions, Escherichia coli cells divide after adding a fixed cell size, a strategy
known as the adder. This concept applies to various microbes and is often explained as the …
known as the adder. This concept applies to various microbes and is often explained as the …
[HTML][HTML] Tools and methods for high-throughput single-cell imaging with the mother machine
R Thiermann, M Sandler, G Ahir, JT Sauls, J Schroeder… - Elife, 2024 - elifesciences.org
Despite much progress, image processing remains a significant bottleneck for high-
throughput analysis of microscopy data. One popular platform for single-cell time-lapse …
throughput analysis of microscopy data. One popular platform for single-cell time-lapse …
Stochastic threshold in cell size control
L Luo, Y Bai, X Fu - Physical Review Research, 2023 - APS
Classic models of cell size control consider that cells divide when reaching a threshold, eg,
size, age, or size extension. The molecular basis of the threshold involves multiple layers of …
size, age, or size extension. The molecular basis of the threshold involves multiple layers of …
Robust control of replication initiation in the absence of DnaA-ATP ⇋ DnaA-ADP regulatory elements in Escherichia coli
Replication initiation, especially the widely conserved master initiator protein DnaA, is one of
the most well-studied biological problems in bacteria. Specifically, conversion between the …
the most well-studied biological problems in bacteria. Specifically, conversion between the …