Raman microspectroscopy for microbiology
Raman microspectroscopy offers microbiologists a rapid and non-destructive technique to
assess the chemical composition of individual live microorganisms in near real time. In this …
assess the chemical composition of individual live microorganisms in near real time. In this …
Microbial storage and its implications for soil ecology
Organisms throughout the tree of life accumulate chemical resources, in particular forms or
compartments, to secure their availability for future use. Here we review microbial storage …
compartments, to secure their availability for future use. Here we review microbial storage …
CheckM2: a rapid, scalable and accurate tool for assessing microbial genome quality using machine learning
Advances in sequencing technologies and bioinformatics tools have dramatically increased
the recovery rate of microbial genomes from metagenomic data. Assessing the quality of …
the recovery rate of microbial genomes from metagenomic data. Assessing the quality of …
[HTML][HTML] Oxford Nanopore R10. 4 long-read sequencing enables the generation of near-finished bacterial genomes from pure cultures and metagenomes without short …
Abstract Long-read Oxford Nanopore sequencing has democratized microbial genome
sequencing and enables the recovery of highly contiguous microbial genomes from isolates …
sequencing and enables the recovery of highly contiguous microbial genomes from isolates …
[HTML][HTML] MiDAS 4: A global catalogue of full-length 16S rRNA gene sequences and taxonomy for studies of bacterial communities in wastewater treatment plants
Microbial communities are responsible for biological wastewater treatment, but our
knowledge of their diversity and function is still poor. Here, we sequence more than 5 million …
knowledge of their diversity and function is still poor. Here, we sequence more than 5 million …
Generating lineage-resolved, complete metagenome-assembled genomes from complex microbial communities
Microbial communities might include distinct lineages of closely related organisms that
complicate metagenomic assembly and prevent the generation of complete metagenome …
complicate metagenomic assembly and prevent the generation of complete metagenome …
High-throughput, single-microbe genomics with strain resolution, applied to a human gut microbiome
W Zheng, S Zhao, Y Yin, H Zhang, DM Needham… - Science, 2022 - science.org
Characterizing complex microbial communities with single-cell resolution has been a long-
standing goal of microbiology. We present Microbe-seq, a high-throughput method that …
standing goal of microbiology. We present Microbe-seq, a high-throughput method that …
[HTML][HTML] Nanopore long-read-only metagenomics enables complete and high-quality genome reconstruction from mock and complex metagenomes
Background The accurate and comprehensive analyses of genome-resolved metagenomics
largely depend on the reconstruction of reference-quality (complete and high-quality) …
largely depend on the reconstruction of reference-quality (complete and high-quality) …
Active predation, phylogenetic diversity, and global prevalence of myxobacteria in wastewater treatment plants
The operation of modern wastewater treatment plants (WWTPs) is driven by activated sludge
microbiota, a complex assemblage of trophically interacting microorganisms. Microbial …
microbiota, a complex assemblage of trophically interacting microorganisms. Microbial …
[HTML][HTML] Diversity and Ecophysiology of the Genus OLB8 and Other Abundant Uncultured Saprospiraceae Genera in Global Wastewater Treatment Systems
Z Kondrotaite, LC Valk, F Petriglieri… - Frontiers in …, 2022 - frontiersin.org
The Saprospiraceae family within the phylum Bacteroidota is commonly present and highly
abundant in wastewater treatment plants (WWTPs) worldwide, but little is known about its …
abundant in wastewater treatment plants (WWTPs) worldwide, but little is known about its …