Barcoding the kingdom Plantae: new PCR primers for ITS regions of plants with improved universality and specificity

T Cheng, C Xu, L Lei, C Li, Y Zhang… - Molecular ecology …, 2016 - Wiley Online Library
The internal transcribed spacer (ITS) of nuclear ribosomal DNA is one of the most commonly
used DNA markers in plant phylogenetic and DNA barcoding analyses, and it has been …

From barcodes to genomes: extending the concept of DNA barcoding

E Coissac, PM Hollingsworth, S Lavergne, P Taberlet - 2016 - Wiley Online Library
DNA barcoding has had a major impact on biodiversity science. The elegant simplicity of
establishing massive scale databases for a few barcode loci is continuing to change our …

Fungal community analysis by high‐throughput sequencing of amplified markers–a user's guide

BD Lindahl, RH Nilsson, L Tedersoo… - New …, 2013 - Wiley Online Library
Novel high‐throughput sequencing methods outperform earlier approaches in terms of
resolution and magnitude. They enable identification and relative quantification of …

Dispersal in microbes: fungi in indoor air are dominated by outdoor air and show dispersal limitation at short distances

RI Adams, M Miletto, JW Taylor, TD Bruns - The ISME journal, 2013 - academic.oup.com
The indoor microbiome is a complex system that is thought to depend on dispersal from the
outdoor biome and the occupants' microbiome combined with selective pressures imposed …

Species diversity of Basidiomycota

MQ He, RL Zhao, DM Liu, TT Denchev, D Begerow… - Fungal diversity, 2022 - Springer
Fungi are eukaryotes that play essential roles in ecosystems. Among fungi, Basidiomycota is
one of the major phyla with more than 40,000 described species. We review species …

[HTML][HTML] GlobalFungi, a global database of fungal occurrences from high-throughput-sequencing metabarcoding studies

T Větrovský, D Morais, P Kohout, C Lepinay, C Algora… - Scientific Data, 2020 - nature.com
Fungi are key players in vital ecosystem services, spanning carbon cycling, decomposition,
symbiotic associations with cultivated and wild plants and pathogenicity. The high …

metaxa2: improved identification and taxonomic classification of small and large subunit rRNA in metagenomic data

J Bengtsson‐Palme, M Hartmann… - Molecular ecology …, 2015 - Wiley Online Library
The ribosomal rRNA genes are widely used as genetic markers for taxonomic identification
of microbes. Particularly the small subunit (SSU; 16S/18S) rRNA gene is frequently used for …

[HTML][HTML] DNA sequence-based identification of Fusarium: Current status and future directions

K O'Donnell, TJ Ward, VARG Robert, PW Crous… - Phytoparasitica, 2015 - Springer
Fusarium ranks as one of the world's most economically destructive and species-rich groups
of mycotoxigenic plant pathogens (Aoki et al. 2014). These ubiquitous molds produce a …

Eutrophication causes microbial community homogenization via modulating generalist species

M Geng, W Zhang, T Hu, R Wang, X Cheng, J Wang - Water research, 2022 - Elsevier
Eutrophication substantially influences the community structure of aquatic organisms and
has become a major threat to biodiversity. However, whether eutrophication is linked to …

An evidence-based consensus for the classification of arbuscular mycorrhizal fungi (Glomeromycota)

D Redecker, A Schüßler, H Stockinger, SL Stürmer… - Mycorrhiza, 2013 - Springer
The publication of a large number of taxon names at all levels within the arbuscular
mycorrhizal fungi (Glomeromycota) has resulted in conflicting systematic schemes and …