Taurine deficiency as a driver of aging

P Singh, K Gollapalli, S Mangiola, D Schranner… - Science, 2023 - science.org
Aging is associated with changes in circulating levels of various molecules, some of which
remain undefined. We find that concentrations of circulating taurine decline with aging in …

Transcriptome-wide profiling and quantification of N6-methyladenosine by enzyme-assisted adenosine deamination

YL Xiao, S Liu, R Ge, Y Wu, C He, M Chen… - Nature …, 2023 - nature.com
Abstract N 6-methyladenosine (m6A), the most abundant internal messenger RNA
modification in higher eukaryotes, serves myriad roles in regulating cellular processes …

Revisiting hematopoiesis: applications of the bulk and single-cell transcriptomics dissecting transcriptional heterogeneity in hematopoietic stem cells

I Monga, K Kaur, SK Dhanda - Briefings in functional genomics, 2022 - academic.oup.com
Hematopoietic system (HS) is one of the most unique, adaptive and comprehensive
developmental systems on which various other body systems relies on. It consists of a …

InsectBase 2.0: a comprehensive gene resource for insects

Y Mei, D Jing, S Tang, X Chen, H Chen… - Nucleic acids …, 2022 - academic.oup.com
Insects are the largest group of animals on the planet and have a huge impact on human life
by providing resources, transmitting diseases, and damaging agricultural crop production …

[HTML][HTML] Revealing the history and mystery of RNA-Seq

A Gondane, HM Itkonen - Current Issues in Molecular Biology, 2023 - mdpi.com
Advances in RNA-sequencing technologies have led to the development of intriguing
experimental setups, a massive accumulation of data, and high demand for tools to analyze …

Arbuscular mycorrhizal fungi heterokaryons have two nuclear populations with distinct roles in host–plant interactions

J Sperschneider, G Yildirir, YS Rizzi, M Malar C… - Nature …, 2023 - nature.com
Arbuscular mycorrhizal fungi (AMF) are prominent root symbionts that can carry thousands
of nuclei deriving from two parental strains in a large syncytium. These co-existing genomes …

[HTML][HTML] Ultrafast bisulfite sequencing detection of 5-methylcytosine in DNA and RNA

Q Dai, C Ye, I Irkliyenko, Y Wang, HL Sun, Y Gao… - Nature …, 2024 - nature.com
Bisulfite sequencing (BS-seq) to detect 5-methylcytosine (5mC) is limited by lengthy reaction
times, severe DNA damage, overestimation of 5mC level and incomplete C-to-U conversion …

Single-Nucleotide Resolution Mapping of N6-Methyladenine in Genomic DNA

CJ Ma, G Li, WX Shao, YH Min, P Wang… - ACS Central …, 2023 - ACS Publications
N 6-Methyladenine (6mA) is a naturally occurring DNA modification in both prokaryotes and
eukaryotes. Herein, we developed a deaminase-mediated sequencing (DM-seq) method for …

N6-methyladenosine in 7SK small nuclear RNA underlies RNA polymerase II transcription regulation

Y Wang, CM Traugot, JL Bubenik, T Li, P Sheng… - Molecular Cell, 2023 - cell.com
Summary N 6-methyladenosine (m 6 A) modifications play crucial roles in RNA metabolism.
How m 6 A regulates RNA polymerase II (RNA Pol II) transcription remains unclear. We find …

[HTML][HTML] N6-methyladenosine in 5′ UTR does not promote translation initiation

E Guca, R Alarcon, MZ Palo, L Santos, S Alonso-Gil… - Molecular Cell, 2024 - cell.com
The most abundant N 6-methyladenosine (m 6 A) modification on mRNAs is installed non-
stoichiometrically across transcripts, with 5′ untranslated regions (5′ UTRs) being the …