Enzymatic synthesis of base-functionalized nucleic acids for sensing, cross-linking, and modulation of protein–DNA binding and transcription

M Hocek - Accounts of Chemical Research, 2019 - ACS Publications
Conspectus Protein–DNA interactions are important in replication, transcription, repair, as
well as epigenetic modifications of DNA, which involve methylation and demethylation of …

Labelling of DNA and RNA in the cellular environment by means of bioorthogonal cycloaddition chemistry

D Ganz, D Harijan, HA Wagenknecht - RSC Chemical Biology, 2020 - pubs.rsc.org
Labelling of nucleic acids as biologically important cellular components is a crucial
prerequisite for the visualization and understanding of biological processes. Efficient …

Genome-wide detection of cytosine methylation by single molecule real-time sequencing

OYO Tse, P Jiang, SH Cheng, W Peng… - Proceedings of the …, 2021 - National Acad Sciences
5-Methylcytosine (5mC) is an important type of epigenetic modification. Bisulfite sequencing
(BS-seq) has limitations, such as severe DNA degradation. Using single molecule real-time …

Single-Nucleotide Resolution Mapping of N6-Methyladenine in Genomic DNA

CJ Ma, G Li, WX Shao, YH Min, P Wang… - ACS Central …, 2023 - ACS Publications
N 6-Methyladenine (6mA) is a naturally occurring DNA modification in both prokaryotes and
eukaryotes. Herein, we developed a deaminase-mediated sequencing (DM-seq) method for …

Bisulfite-free and single-base resolution detection of epigenetic DNA modification of 5-methylcytosine by methyltransferase-directed labeling with APOBEC3A …

J Xiong, KK Chen, NB Xie, TT Ji, SY Yu… - Analytical …, 2022 - ACS Publications
DNA methylation (5-methylcytosine, 5mC) is the most prevalent epigenetic modification that
is predominantly found in CG dinucleotides in mammalian genomes. In-depth investigation …

Transformation of 5-carboxylcytosine to cytosine through C–C bond cleavage in human cells constitutes a novel pathway for DNA demethylation

Y Feng, NB Xie, WB Tao, JH Ding, XJ You… - CCS …, 2021 - chinesechemsoc.org
Active demethylation of 5-methylcytosine (5mC) can be realized through ten-eleven
translocation (TET) dioxygenase-mediated oxidation of 5mC to 5-hydroxymethylcytosine …

Direct metal-free synthesis of uracil-and pentaazaphenalene-functionalized porous organic polymers via quadruple Mannich cyclization and their nucleobase …

LR Ahmed, CH Chuang, J Luder, HW Yang… - …, 2022 - ACS Publications
The development of new interconnections and synthetic approaches for the formation of
porous organic polymers (POPs) is a challenging endeavor. Herein, we report a facile gram …

Detection of nucleotide modifications in bacteria and bacteriophages: Strengths and limitations of current technologies and software

TK Nielsen, LM Forero‐Junco, W Kot… - Molecular …, 2023 - Wiley Online Library
RNA and DNA modifications occur in eukaryotes and prokaryotes, as well as in their viruses,
and serve a wide range of functions, from gene regulation to nucleic acid protection …

Simultaneous electrochemical detection of guanine and adenine using reduced graphene oxide decorated with AuPt nanoclusters

B Mao, L Qian, M Govindhan, Z Liu, A Chen - Microchimica Acta, 2021 - Springer
A rapid and sensitive electrochemical sensing platform is reported based on bimetallic gold-
platinum nanoclusters (AuPtNCs) dispersed on reduced graphene oxide (rGO) for the …

Single-base resolution detection of adenosine-to-inosine RNA editing by endonuclease-mediated sequencing

JJ Chen, XJ You, L Li, NB Xie, JH Ding… - Analytical …, 2022 - ACS Publications
RNA molecules contain diverse modifications that play crucial roles in a wide variety of
biological processes. Adenosine-to-inosine (A-to-Ino) RNA editing is one of the most …