The Neandertal genome and ancient DNA authenticity

RE Green, AW Briggs, J Krause, K Prüfer… - The EMBO …, 2009 - embopress.org
Recent advances in highthoughput DNA sequencing have made genomescale analyses
of genomes of extinct organisms possible. With these new opportunities come new …

[PDF][PDF] Forensic individual age estimation with DNA: from initial approaches to methylation tests

A Freire-Aradas, C Phillips… - Forensic Sci Rev, 2017 - forensicsciencereview.com
Individual age estimation is a key factor in forensic science analysis that can provide very
useful information applicable to criminal, legal, and anthropological investigations. Forensic …

DNA damage in plant herbarium tissue

M Staats, A Cuenca, JE Richardson… - PLoS one, 2011 - journals.plos.org
Dried plant herbarium specimens are potentially a valuable source of DNA. Efforts to obtain
genetic information from this source are often hindered by an inability to obtain amplifiable …

Cytosine deamination is a major cause of baseline noise in next-generation sequencing

G Chen, S Mosier, CD Gocke, MT Lin… - Molecular diagnosis & …, 2014 - Springer
Abstract Background and Objectives As next-generation sequencing (NGS) becomes a
major sequencing platform in clinical diagnostic laboratories, it is critical to identify artifacts …

Novel high-resolution characterization of ancient DNA reveals C > U-type base modification events as the sole cause of post mortem miscoding lesions

P Brotherton, P Endicott, JJ Sanchez… - Nucleic acids …, 2007 - academic.oup.com
Ancient DNA (aDNA) research has long depended on the power of PCR to amplify trace
amounts of surviving genetic material from preserved specimens. While PCR permits …

Revisiting the taxonomy of the Rattini tribe: a phylogeny-based delimitation of species boundaries

M Pagès, Y Chaval, V Herbreteau… - BMC evolutionary …, 2010 - Springer
Background Rodents are recognized as hosts for at least 60 zoonotic diseases and may
represent a serious threat for human health. In the context of global environmental changes …

Next generation sequencing of ancient DNA: requirements, strategies and perspectives

M Knapp, M Hofreiter - Genes, 2010 - mdpi.com
The invention of next-generation-sequencing has revolutionized almost all fields of genetics,
but few have profited from it as much as the field of ancient DNA research. From its …

Use of FFPE-derived DNA in next generation sequencing: DNA extraction methods

SJ McDonough, A Bhagwate, Z Sun, C Wang… - PloS one, 2019 - journals.plos.org
Archival tissues represent a rich resource for clinical genomic studies, particularly when
coupled with comprehensive medical records. Use of these in next generation sequencing …

A comparative study of ancient sedimentary DNA, pollen and macrofossils from permafrost sediments of northern Siberia reveals longterm vegetational stability

T Jørgensen, J Haile, PER Möller, A Andreev… - Molecular …, 2012 - Wiley Online Library
Although ancient DNA from sediments (sedaDNA) has been used to investigate past
ecosystems, the approach has never been directly compared with the traditional methods of …

Genome-wide nucleosome map and cytosine methylation levels of an ancient human genome

JS Pedersen, E Valen, AMV Velazquez… - Genome …, 2014 - genome.cshlp.org
Epigenetic information is available from contemporary organisms, but is difficult to track back
in evolutionary time. Here, we show that genome-wide epigenetic information can be …