Targets for combating the evolution of acquired antibiotic resistance

MJ Culyba, CY Mo, RM Kohli - Biochemistry, 2015 - ACS Publications
Bacteria possess a remarkable ability to rapidly adapt and evolve in response to antibiotics.
Acquired antibiotic resistance can arise by multiple mechanisms but commonly involves …

Assuring the quality of next-generation sequencing in clinical microbiology and public health laboratories

AS Gargis, L Kalman, IM Lubin - Journal of Clinical Microbiology, 2016 - Am Soc Microbiol
Clinical microbiology and public health laboratories are beginning to utilize next-generation
sequencing (NGS) for a range of applications. This technology has the potential to transform …

Key parameters for genomics-based real-time detection and tracking of multidrug-resistant bacteria: a systematic analysis

CL Gorrie, AG Da Silva, DJ Ingle, C Higgs… - The Lancet …, 2021 - thelancet.com
Background Pairwise single nucleotide polymorphisms (SNPs) are a cornerstone of
genomic approaches to the inference of transmission of multidrug-resistant (MDR) …

New insights into dissemination and variation of the health care-associated pathogen Acinetobacter baumannii from genomic analysis

MS Wright, DH Haft, DM Harkins, F Perez, KM Hujer… - MBio, 2014 - Am Soc Microbiol
Acinetobacter baumannii is a globally important nosocomial pathogen characterized by an
increasing incidence of multidrug resistance. Routes of dissemination and gene flow among …

Within-host bacterial diversity hinders accurate reconstruction of transmission networks from genomic distance data

CJ Worby, M Lipsitch, WP Hanage - PLoS computational biology, 2014 - journals.plos.org
The prospect of using whole genome sequence data to investigate bacterial disease
outbreaks has been keenly anticipated in many quarters, and the large-scale collection and …

Carbapenem-resistant Enterobacteriaceae in special populations: solid organ transplant recipients, stem cell transplant recipients, and patients with hematologic …

SM Pouch, MJ Satlin - Virulence, 2017 - Taylor & Francis
Carbapenem-resistant Enterobacteriaceae (CRE) are a major global public health concern
and pose a serious threat to immunocompromised hosts, particularly patients with …

Rapid nanopore sequencing of plasmids and resistance gene detection in clinical isolates

JK Lemon, PP Khil, KM Frank… - Journal of clinical …, 2017 - Am Soc Microbiol
Recent advances in nanopore sequencing technology have led to a substantial increase in
throughput and sequence quality. Together, these improvements may permit real-time …

New opportunities for managing acute and chronic lung infections

WOCM Cookson, MJ Cox, MF Moffatt - Nature Reviews Microbiology, 2018 - nature.com
Lung diseases caused by microbial infections affect hundreds of millions of children and
adults throughout the world. In Western populations, the treatment of lung infections is a …

Hypermucoviscosity regulator RmpD interacts with Wzc and controls capsular polysaccharide chain length

OG Ovchinnikova, LP Treat, T Teelucksingh, BR Clarke… - Mbio, 2023 - Am Soc Microbiol
Klebsiella pneumoniae is a leading cause of nosocomial infections, including pneumonia,
bacteremia, and urinary tract infections. Treatment options are increasingly restricted by the …

Antimicrobial resistance: a One Health perspective

LH Kahn - Transactions of the Royal Society of Tropical …, 2017 - academic.oup.com
Introduction Worsening antimicrobial resistance (AMR) threatens the practice of modern
human and veterinary medicine. For decades, medicine and agriculture have blamed each …